Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0996
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   2.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.7  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    26   4.8  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   6.4  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   8.5  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 619  SPYAY*TSGSSQLLPFCSTRSF 684
            SPYA+ T  S+ L PF STRS+
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 555  NFSGTSC*KLFILKDRSAVLSQSL 626
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 736 YICQRITQVS*GQL--SEDRNFAWSKRAKAGLIQMF 635
           Y+C  +  +S G L  SED +  W    K GLI+ F
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQF 162


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 700 QLSEDRNFAWSKRAKAGLIQMFSTHRDCESTADRSFSIKS 581
           +L+   N+  S RAK+  +   S H+ CE   +RS  +++
Sbjct: 426 RLTNSSNYEASPRAKSLNLSQVSLHQACEPEYNRSSLVRA 465


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -3

Query: 575 ARGARKVTTGITGLWQPSVHSDVLFDPSMSALPIIAKQNSPSVGLFTHQKGT*AGFRPS* 396
           A GAR   T IT   Q S  S V  +P+ S      + N+P+    + +  T + F    
Sbjct: 145 ASGARTQRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAPAASPASSEPRTFSSFEDQY 204

Query: 395 DRL 387
            RL
Sbjct: 205 GRL 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,229
Number of Sequences: 5004
Number of extensions: 60073
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)