Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0996
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.3  
07_03_0846 - 21983581-21986055                                         29   2.9  
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349...    29   3.8  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    28   6.7  
01_06_1777 + 39818212-39819696                                         28   6.7  
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960...    28   8.8  
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938...    28   8.8  
02_02_0156 - 7277793-7277875,7278535-7278638,7278808-7279211,727...    28   8.8  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 232 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 98
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 90  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 239
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>02_01_0486 -
           3495792-3496034,3496862-3496934,3497128-3497422,
           3497585-3497759,3498349-3498795,3499994-3500053
          Length = 430

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -1

Query: 340 VREEPQFRTFGSCTRPSGRWCEATIRGIILNAS-KAEASLAESGKDMLTVEPRESGGSKQ 164
           +   P     G   RP+    +++IRGII   S KA++SL +  + +L +    S   +Q
Sbjct: 60  ISPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQ 119

Query: 163 CDFTSRVSHS 134
              T+  S S
Sbjct: 120 VKATTSRSFS 129


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 590 YKEFLARG-ARKVTTGITGLWQPSVHSDVLFD 498
           YK F A G  RKV  GIT  + PS+  D+ FD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664


>01_06_1777 + 39818212-39819696
          Length = 494

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 183 SRGSTVSISLPDSARLASALEAFRIIPRMVASHHRP-LGRVHEPNVRNCGSSRT 341
           +R  T SI +      +  ++A +I+ RMV  HHRP  G  +      C + RT
Sbjct: 399 TRKETFSILISGLCSESRFIDAAQIMERMVKGHHRPEAGEFNNVIEGLCSAGRT 452


>03_05_0951 +
           29093962-29094373,29095291-29095388,29095689-29096087,
           29096999-29097724,29097802-29097968,29098046-29098311,
           29098396-29098581,29099072-29099346,29099435-29099683
          Length = 925

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -1

Query: 241 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 68
           K+ AS A  G D     P R  GG K+    S  + SKR  + R + F     +L    L
Sbjct: 4   KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63

Query: 67  TRASR 53
           TRA+R
Sbjct: 64  TRAAR 68


>02_04_0276 +
           21491150-21492761,21492891-21492947,21493817-21493870,
           21493994-21494022
          Length = 583

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -1

Query: 319 RTFGSCTRPSGRWCEATIRGIILNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 152
           R  GS  RP    C A I+ +  +   AEA   LA  G D++      +G  G+ Q D  
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145

Query: 151 SRV 143
            R+
Sbjct: 146 RRL 148


>02_02_0156 -
           7277793-7277875,7278535-7278638,7278808-7279211,
           7279403-7279543,7279700-7279904,7279984-7280093
          Length = 348

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 23/49 (46%), Positives = 25/49 (51%)
 Frame = -2

Query: 354 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLS*TPLRPKPA*PNPAR 208
           SNTA  ER      L  A+ R      LP AG S + LRPKP  P PAR
Sbjct: 279 SNTAAKER------LTRAVNRVQK-LTLPKAGQS-SSLRPKPRDPAPAR 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,367,564
Number of Sequences: 37544
Number of extensions: 431723
Number of successful extensions: 1132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)