Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0996
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53440.2 68416.m05898 expressed protein                             28   5.6  
At3g53440.1 68416.m05897 expressed protein                             28   5.6  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    27   9.8  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   9.8  

>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 29/111 (26%), Positives = 46/111 (41%)
 Frame = +3

Query: 12  EPRHRTEKYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRG 191
           +P  R+ +   L++RD++VK + D     +P    RR        RLV S      DSR 
Sbjct: 12  QPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSDSPIEDSRS 71

Query: 192 STVSISLPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNVRNCGSSRTE 344
             ++IS      L  +L         ++S   P     +P   +  SSRT+
Sbjct: 72  KKLNISKDGFPSLRRSLR--------LSSRECPEVNKEKPKTASTSSSRTK 114


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 29/111 (26%), Positives = 46/111 (41%)
 Frame = +3

Query: 12  EPRHRTEKYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRG 191
           +P  R+ +   L++RD++VK + D     +P    RR        RLV S      DSR 
Sbjct: 12  QPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSDSPIEDSRS 71

Query: 192 STVSISLPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNVRNCGSSRTE 344
             ++IS      L  +L         ++S   P     +P   +  SSRT+
Sbjct: 72  KKLNISKDGFPSLRRSLR--------LSSRECPEVNKEKPKTASTSSSRTK 114


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 289 GRWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCD 158
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 240 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 100
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,810
Number of Sequences: 28952
Number of extensions: 330130
Number of successful extensions: 907
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)