Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0993
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0547 + 25432079-25432356,25432446-25432522,25432685-254328... 29 2.1
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913... 29 3.7
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 8.5
06_02_0092 - 11624905-11625123,11625206-11625292,11625767-116258... 27 8.5
04_03_0946 + 20975955-20976095,20976189-20976330,20976449-209765... 27 8.5
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 27 8.5
03_04_0201 - 18409088-18409306,18409389-18409475,18409950-184100... 27 8.5
03_02_0578 + 9603118-9605633,9605766-9605781 27 8.5
02_03_0404 + 18648632-18648669,18649319-18649379,18649449-186494... 27 8.5
>03_05_0547 +
25432079-25432356,25432446-25432522,25432685-25432819,
25433516-25433570,25433696-25433783,25435040-25435138,
25435227-25435358
Length = 287
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 341 ARLLPSLDVVAVSQAPSPESNPDSP-LPVTPW*SQKLPSKVDKA 213
AR LP VA S+A SNP P LP TP + PSKVD++
Sbjct: 37 ARTLPPR-AVASSRATVLVSNPPPPPLPPTPAPAAVAPSKVDRS 79
>06_01_1109 +
9127761-9127976,9128084-9128290,9129539-9129753,
9131665-9131904,9133372-9133570,9134666-9134992,
9135977-9136070,9136307-9136320
Length = 503
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 4 LISDSVTWITVVIRELIHAIRTLTSDGMSACIRSKPID 117
L++++ T I + R +IH + L++DG+ ++ + +D
Sbjct: 371 LVAENTTGIGALERAIIHQLNKLSADGLEKLMKDEQLD 408
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 10/39 (25%)
Frame = -1
Query: 396 ESRIVIFRHYLPCREWVICA----------PAAFLGCGS 310
+SR++IF HY C + ++C+ PAAF+G S
Sbjct: 524 DSRVIIFAHYRECVKEILCSLRNIDGELVRPAAFIGQSS 562
>06_02_0092 -
11624905-11625123,11625206-11625292,11625767-11625889,
11625992-11626351,11626427-11626511,11626603-11626661,
11627173-11627265,11627360-11627464,11627539-11627636,
11627811-11627916,11628009-11628131,11628986-11629021,
11629113-11629310,11629415-11629612,11629917-11630056,
11630181-11630322,11630416-11630556
Length = 770
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 386 SLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVT 255
++ F T S +GS F+R+ + DVV + +A +P LP T
Sbjct: 428 AIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPAT 470
>04_03_0946 +
20975955-20976095,20976189-20976330,20976449-20976588,
20976893-20977090,20977195-20977392,20977484-20977519,
20978374-20978496,20978589-20978694,20978869-20978966,
20979041-20979145,20979240-20979332,20979842-20979900,
20979984-20980068,20980144-20980503,20980606-20980728,
20981203-20981289,20981372-20981590
Length = 770
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 386 SLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVT 255
++ F T S +GS F+R+ + DVV + +A +P LP T
Sbjct: 428 AIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPAT 470
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 329 PSLDVVAVSQAPSPESNPDSPLP 261
P LD ++Q PSP +NP P P
Sbjct: 55 PPLDEETLAQFPSPPTNPSPPPP 77
>03_04_0201 -
18409088-18409306,18409389-18409475,18409950-18410072,
18410175-18410534,18410610-18410694,18410780-18410838,
18411350-18411442,18411537-18411641,18411716-18411813,
18411988-18412093,18412186-18412308,18413163-18413198,
18413290-18413487,18413592-18413789,18414094-18414233,
18414356-18414497,18414591-18414731
Length = 770
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 386 SLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVT 255
++ F T S +GS F+R+ + DVV + +A +P LP T
Sbjct: 428 AIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPAT 470
>03_02_0578 + 9603118-9605633,9605766-9605781
Length = 843
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 427 VYSFRLRGLVRVPYRYFSSLPPVPGVGNLRAC 332
VY + +G +R + Y S LPP+P L AC
Sbjct: 581 VYEYMAKGTLR-SHLYGSDLPPLPWKQRLEAC 611
>02_03_0404 +
18648632-18648669,18649319-18649379,18649449-18649476,
18649787-18649861,18649929-18649984,18650085-18650129,
18650224-18650475,18650586-18650680,18651114-18651204,
18651356-18651466,18651556-18651750,18651827-18652018
Length = 412
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 233 VVSATTMVSRVTGN-QGSIPEREPEKRLPHPR 325
V S+TT S++T + + +P +E E+R+P PR
Sbjct: 159 VESSTTHESKLTSSSEPQLPPKERERRVPMPR 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,380
Number of Sequences: 37544
Number of extensions: 357210
Number of successful extensions: 1102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -