Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0993
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.011
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.043
SB_1429| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.53 
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                29   2.1  
SB_27873| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)                      28   4.9  
SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)                  27   8.6  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = -2

Query: 320 DVVAVSQAPSPESNPDSPLPV 258
           DVVAVSQAPSPESNP+SP PV
Sbjct: 105 DVVAVSQAPSPESNPNSPSPV 125


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -2

Query: 311 AVSQAPSPESNPDSPLPV 258
           AVSQAPSPESNP+SP PV
Sbjct: 52  AVSQAPSPESNPNSPSPV 69


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 310 PFLRLPLRNRTLIPRYP 260
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_1429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 191 GDASFKCLPYQLSMVVS 241
           GD SFK LPYQLSM+++
Sbjct: 65  GDVSFKFLPYQLSMIIA 81


>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 191 GDASFKCLPYQLSMVVSATT--MVSRVT---GNQGSIPEREPEKRLP 316
           GD SFK LPYQLSM           R T   G+ GS  + E  +R+P
Sbjct: 685 GDVSFKFLPYQLSMEGGRRNERKKKRTTFNGGSLGSCIDEERSQRIP 731


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 329 PSLDVVAVSQAPSPESNPDSPLPVTP 252
           P+ DV+A  Q P P S  D PLP  P
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLPPPP 100


>SB_27873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +2

Query: 191 GDASFKCLPYQLSM 232
           GD SFK LPYQLSM
Sbjct: 91  GDVSFKFLPYQLSM 104


>SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)
          Length = 607

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 207 LKDASPVLDHAICKSYPDSSKLTTSDARPSVDWF*SNTSTHPITGQSSDCMY 52
           LK AS   + +     PD++K TT  +  S     S TSTH    +SS   Y
Sbjct: 126 LKPASSRQEDSAKSIVPDNNKSTTVSSCKSTTAVNSRTSTHSAGSKSSSAAY 177


>SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)
          Length = 943

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 321 QGRQQARK--LPTPGTGGSDEK*RYGTLTRPRNRN 419
           QGR + RK  L  PG GGSD K R     +   RN
Sbjct: 136 QGRDEVRKAILDIPGEGGSDMKSRLQREVQEARRN 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,858,893
Number of Sequences: 59808
Number of extensions: 388236
Number of successful extensions: 1139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)