Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0993
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical
           protein C45G7.1 protein.
          Length = 145

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 412 IGMSTL*IF*RGTIGGQVWCQQPR*FQLQ*RIQNCCG 522
           +GM    +F R   GG   C+ P   +    IQ CCG
Sbjct: 106 LGMGECEVFARNHNGGPTGCRNPGTLEYWQSIQKCCG 142


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 349 GNLRACCLPWMW*PFLRLPLR 287
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 514 CCG*KARSCICAPRCRC 564
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 304 ETATTSKEGSRRANYPLPAREVVTKNNDTGLLRGLVIGMST 426
           E   T    +RR + PLPA    + +N+TGLL  ++  +++
Sbjct: 3   ENGATPVAAARR-HRPLPAERATSNSNETGLLINVIRSLTS 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,656
Number of Sequences: 27780
Number of extensions: 280910
Number of successful extensions: 831
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)