Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0993
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   3.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 132 PKSLILMNLDNFCRSHGQVPAT 197
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 116 SIGFDLIQALIPSLVRVLIACIS 48
           S+G+ LIQ  IPS + V+I+ +S
Sbjct: 219 SMGYYLIQIYIPSGLIVIISWVS 241


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 116 SIGFDLIQALIPSLVRVLIACIS 48
           S+G+ LIQ  IPS + V+I+ +S
Sbjct: 219 SMGYYLIQIYIPSGLIVIISWVS 241


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 116 SIGFDLIQALIPSLVRVLIACIS 48
           S+G+ LIQ  IPS + V+I+ +S
Sbjct: 158 SMGYYLIQIYIPSGLIVIISWVS 180


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -2

Query: 155 IHQN*RLRTRGPPSIGFDLIQALIPSLVRVLIACIS 48
           I+Q   L  +   +IG+ + Q  +PS++ V+++ +S
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS 262


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 184 KYRRRIFQMSALSTFDGSFCDYHGVTGNGESGFD 285
           K   RIF+ +       + CD + V  + E G+D
Sbjct: 516 KINYRIFKANVKEAVKDTXCDPNYVVPDSEHGYD 549


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 18  SDVDNCGNSRANTCN 62
           +D    GNSRANT N
Sbjct: 125 NDAHGTGNSRANTYN 139


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 327  RQQARKLPTPGTGGSDE 377
            R+Q RK  TPG   SDE
Sbjct: 1768 RRQQRKQQTPGDVESDE 1784


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 327  RQQARKLPTPGTGGSDE 377
            R+Q RK  TPG   SDE
Sbjct: 1764 RRQQRKQQTPGDVESDE 1780


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,987
Number of Sequences: 438
Number of extensions: 3786
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)