Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0993
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41700.1 68415.m05151 ABC transporter family protein similar ...    29   1.8  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    29   2.3  
At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repe...    28   5.4  
At4g27850.1 68417.m03999 proline-rich family protein contains pr...    27   9.4  
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea...    27   9.4  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    27   9.4  

>At2g41700.1 68415.m05151 ABC transporter family protein similar to
           ATP-binding cassette transporter ABCA1 GI:18031705 from
           [Arabidopsis thaliana]
          Length = 1822

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -2

Query: 155 IHQN*RLRTRGPPSIGFDLIQALIPSLVRVLIACISSRITTVIHVTESDI 6
           + +N  L+TR P     ++   L+P++V +L+  + +R+ T IH   S+I
Sbjct: 12  LRKNWLLKTRHPFVTSAEI---LLPTIVMLLLIAVRTRVDTTIHPAHSNI 58


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 156 DSSKLTTSDARPSVDWF*SNTSTHPITGQSSD 61
           DS     S  RPS+DWF  N S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repeat
           (PF00400); 42% similarity to fimbriae-associated protein
           Fap1 (gi:3929312) [Streptococcus parasanguinis]
          Length = 994

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 353 SG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTPW 249
           +G   +L+P+L+V A  Q P PE   +  +P T W
Sbjct: 646 TGLVVKLIPNLEVYA--QLPRPEGVREGSMPYTAW 678


>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 299 APSPESNPDSPLPVTPW*SQKLPS 228
           +PSP   PDSPLP +P     LPS
Sbjct: 254 SPSPTPGPDSPLP-SPGPDSPLPS 276


>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to myosin heavy chain kinase B (gb:U90946)
           [Dictyostelium discoideum]
          Length = 469

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 332 LPSLDVVAVSQAP-SPESNPDSPLPVTPW*SQKLPSKVD 219
           +P  D+  ++    SP     SPL  +PW  Q  PS VD
Sbjct: 27  IPDPDIYDITYVDISPSEGSSSPLSKSPWSVQVDPSAVD 65


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -2

Query: 338 RLLPSLDVVAVSQAPSPESNPDSPLPVTPW 249
           RLLPSL V  VS  PSP  +P +PL + P+
Sbjct: 84  RLLPSLKV--VSSLPSPARDP-TPLSLLPF 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,853,666
Number of Sequences: 28952
Number of extensions: 267209
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)