Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0991
(539 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 1.6
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 2.8
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 2.8
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 2.8
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 2.8
U42831-1|AAA83513.2| 614|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 6.5
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 6.5
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 27 8.6
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 27 8.6
AC024748-4|AAF60410.1| 251|Caenorhabditis elegans Hypothetical ... 27 8.6
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 397 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 284
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 414 LTR*NEHNARTSTRPGTGRIRFPSKPDT 331
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 414 LTR*NEHNARTSTRPGTGRIRFPSKPDT 331
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 414 LTR*NEHNARTSTRPGTGRIRFPSKPDT 331
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 414 LTR*NEHNARTSTRPGTGRIRFPSKPDT 331
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>U42831-1|AAA83513.2| 614|Caenorhabditis elegans Hypothetical
protein R11B5.1 protein.
Length = 614
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 418 FNIMRPQKLYIFNMTLAKIVLRFGLDPDPRFRPSADLPSR 537
+ I+RP Y+ +MT VL +DP P F A+L R
Sbjct: 387 YAILRPDIGYVQSMTFIAAVLLIQMDPYPAFISFANLLDR 426
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -1
Query: 164 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 36
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 148 IRTPPQMRCSSRSEPYLPSIGFHGT 74
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 372 PGTGRIRFPSKPDTPRSSEPILIPKLRI 289
P ++ SKP TP + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 169 FSRSAESIRTPPQMRCSSRSEP--YLPSIGFHGTRT 68
FS S E+ T Q R + S P YLPSIG + T T
Sbjct: 11 FSASNENNETIKQGRDADSSSPSEYLPSIGHYFTHT 46
>AC024748-4|AAF60410.1| 251|Caenorhabditis elegans Hypothetical
protein Y110A2AR.1 protein.
Length = 251
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 448 IFNMTLAKIVLRFGLDPDPRFRPSADLPSR 537
I + + +I LDP+PR RP+ PSR
Sbjct: 143 ISQLEIEEIDSSMSLDPEPRRRPATRTPSR 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,014
Number of Sequences: 27780
Number of extensions: 277841
Number of successful extensions: 964
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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