Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0991
(539 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 4.6
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 22 4.6
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 8.1
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 21 8.1
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 21 8.1
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 21 8.1
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 8.1
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 8.1
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 21 8.1
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 2.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 350 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 448
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 2.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 350 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 448
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.8 bits (44), Expect = 4.6
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 112 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 29
SE P+ HG R RQ+ + D +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 21.8 bits (44), Expect = 4.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 479 YVSDWIRTRVSGLPRIFLAV 538
YVS +I T V+G IFL +
Sbjct: 234 YVSGFITTEVAGTYAIFLYI 253
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 89 RIPWNSNAQAEKKTLPGPLG 30
+IPW+ N +A K G G
Sbjct: 334 QIPWDKNVEALAKWANGQTG 353
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.0 bits (42), Expect = 8.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 487 RNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 344
R R S+ I ++ ++ N N+ K+ NI+ P P+PV
Sbjct: 70 RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPV 117
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.0 bits (42), Expect = 8.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 487 RNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 344
R R S+ I ++ ++ N N+ K+ NI+ P P+PV
Sbjct: 70 RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPV 117
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.0 bits (42), Expect = 8.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 487 RNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 344
R R S+ I ++ ++ N N+ K+ NI+ P P+PV
Sbjct: 70 RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPV 117
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.0 bits (42), Expect = 8.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 487 RNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 344
R R S+ I ++ ++ N N+ K+ NI+ P P+PV
Sbjct: 303 RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPV 350
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 361 PHPLPVQTRHAPVLRANPYSEV 296
P PLP A + + +PYS +
Sbjct: 652 PFPLPPNLASANISQLDPYSSL 673
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 43 PDLSAASSGHFGLP 2
PDL+ S G GLP
Sbjct: 336 PDLAGTSQGSAGLP 349
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,527
Number of Sequences: 438
Number of extensions: 3680
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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