SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0991
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    32   0.28 
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    32   0.28 
At2g45560.1 68415.m05665 cytochrome P450 family protein                30   0.86 
At1g76965.1 68414.m08961 glycine-rich protein                          30   1.1  
At1g18700.1 68414.m02333 DNAJ heat shock N-terminal domain-conta...    29   2.0  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   2.6  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   2.6  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   3.5  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   3.5  
At3g25250.1 68416.m03154 protein kinase family protein contains ...    28   4.6  
At5g22390.1 68418.m02612 expressed protein                             27   6.1  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   6.1  
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta...    27   8.0  
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta...    27   8.0  

>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -3

Query: 438 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 262
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408

Query: 261 YSTTRGSSP 235
              T G+SP
Sbjct: 409 --ITPGASP 415


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -3

Query: 438 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 262
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408

Query: 261 YSTTRGSSP 235
              T G+SP
Sbjct: 409 --ITPGASP 415


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +1

Query: 343 GREADAAGAGSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPDPRF 510
           GR+ +    G+GR  C    LA    ++M    LY F+  L K VL   LD D  F
Sbjct: 435 GRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMDETF 490


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 372 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFADFPYLHYSTTRGSSPWRPAADM 214
           PG   + FP KP+ P    P  +P+L + F D   L  +T      + P  ++
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGDDRRLLENTVCEHMRYNPTPEL 145


>At1g18700.1 68414.m02333 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI8
           DnaJ homolog subfamily B member 7 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 700

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 428 CGLKNCIYLI*HSRKSSYVSDWIRTRVSGLPRIF 529
           C   +C+        +  ++DW  T V GLPR+F
Sbjct: 234 CKTADCLIRFEGELSADAITDWFATTVLGLPRVF 267


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 159 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 25
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 129 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 230
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 504 RVRIQSET*DDFRECHIKYIQFLRPH 427
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 154 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 56
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At3g25250.1 68416.m03154 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 421

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = -2

Query: 310 PYSEVTDPICRLPLPTLFYD*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAES 149
           P +    P    P PT+    RLF   + C  G  P   + VH S   + S  S
Sbjct: 176 PRTPQPSPSLSKPSPTMKRKKRLFRFTSFCNSGISPQESISVHSSSTLAVSDSS 229


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 33 ERSGKSFLFCLSVRVPWNPIEG 98
          + S KSFL  LS   PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 196 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 107
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 412 NSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 287
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 412 NSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 287
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543,459
Number of Sequences: 28952
Number of extensions: 270429
Number of successful extensions: 824
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -