Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0987
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50260.1 68414.m05635 C2 domain-containing protein low simila... 30 1.3
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put... 30 1.7
At1g76965.1 68414.m08961 glycine-rich protein 29 2.2
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 3.8
At5g42370.1 68418.m05159 expressed protein 29 3.8
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 3.8
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 5.1
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 28 6.7
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 28 6.7
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 28 6.7
At5g22390.1 68418.m02612 expressed protein 27 8.9
At5g16770.2 68418.m01964 myb family transcription factor (MYB9) ... 27 8.9
At5g16770.1 68418.m01963 myb family transcription factor (MYB9) ... 27 8.9
>At1g50260.1 68414.m05635 C2 domain-containing protein low
similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
contains Pfam profile PF00168: C2 domain
Length = 675
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 572 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 688
R+RVLRPS + + + +S FR S T R A N
Sbjct: 37 RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75
>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 884
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 555 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 689
T+ T SG R++L+ R+ D HD + PFNG T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 448 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 353
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 235 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 101
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 174 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 64
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 37 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 168
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 230 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 132
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 211 GGVRILSADLENSGEDVRGDVAPVRTH 291
GG+++ S + ++S +R DV+P RTH
Sbjct: 12 GGLKVESGEQKSSWPTMRFDVSPYRTH 38
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 457 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 338
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 457 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 338
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 109 ERSGKSFLFCLSVRVPWNPIEG 174
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At5g16770.2 68418.m01964 myb family transcription factor (MYB9)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 336
Score = 27.5 bits (58), Expect = 8.9
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = -1
Query: 500 Y*NTNSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 321
Y NT+ K+ + ID HRP +T H VL A P L +L+
Sbjct: 107 YWNTHLRKKLLQMGIDPVTHRP-----RTDHLNVLAALPQLIAAANFNSLLNLNQNVQLD 161
Query: 320 ALHL--GDLLRIWVRTGATSPRTSSPEFSRS 234
A L LL ++ +T+ T++P FS S
Sbjct: 162 ATTLAKAQLLHTMIQVLSTNNNTTNPSFSSS 192
>At5g16770.1 68418.m01963 myb family transcription factor (MYB9)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 336
Score = 27.5 bits (58), Expect = 8.9
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = -1
Query: 500 Y*NTNSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 321
Y NT+ K+ + ID HRP +T H VL A P L +L+
Sbjct: 107 YWNTHLRKKLLQMGIDPVTHRP-----RTDHLNVLAALPQLIAAANFNSLLNLNQNVQLD 161
Query: 320 ALHL--GDLLRIWVRTGATSPRTSSPEFSRS 234
A L LL ++ +T+ T++P FS S
Sbjct: 162 ATTLAKAQLLHTMIQVLSTNNNTTNPSFSSS 192
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,197
Number of Sequences: 28952
Number of extensions: 356722
Number of successful extensions: 1059
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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