BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVm0986 (624 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 134 7e-33 SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 28 1.3 SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 2.2 SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 27 2.9 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 5.1 SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 5.1 SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 6.7 SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 6.7 SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 8.9 >SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|||Manual Length = 512 Score = 134 bits (325), Expect = 7e-33 Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 1/99 (1%) Frame = +3 Query: 255 AKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRSFAVK 434 AKG+GAFG FE T DITKY+ +F +GK+TP+ RFSTVGGE G+ DT RDPR FA+K Sbjct: 61 AKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALK 120 Query: 435 FYTDDGVWDLVGNNTPIFFIRDPT-FSRVLSILRREPCN 548 FYTD+G++D+VGNNTP+FF+RDP F + +R P N Sbjct: 121 FYTDEGIFDMVGNNTPVFFLRDPAKFPLFIHTQKRNPQN 159 Score = 55.2 bits (127), Expect = 7e-09 Identities = 26/47 (55%), Positives = 30/47 (63%) Frame = +1 Query: 112 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 252 TT +G P+ A VGK GP LLQD + +D FDRERIPERVV Sbjct: 13 TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVV 59 Score = 42.7 bits (96), Expect = 4e-05 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = +1 Query: 484 FSL*EIQHFPEFYPYSEENPATHLKDPDMFWDFLDLRPETIHQLLYL 624 F L + FP F + NP +KD MFWD+L E+IHQ++ L Sbjct: 138 FFLRDPAKFPLFIHTQKRNPQNDMKDATMFWDYLSQNAESIHQVMIL 184 >SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces pombe|chr 1|||Manual Length = 567 Score = 27.9 bits (59), Expect = 1.3 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -3 Query: 544 QGSLLSMDKTRENVGSLIKKMGVLFPTKSHTPSSV*NFTAKLRGSRTVSADPLSPP 377 + + LS K EN+ S+ G + ++TPSSV + + + S DP +PP Sbjct: 12 KANTLSESKVSENLMSINSDSGT---SNANTPSSVTSNSKPVASSTAAKKDPNAPP 64 >SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1388 Score = 27.1 bits (57), Expect = 2.2 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -1 Query: 417 EGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 304 E +E+Y+Q+ + SV + + W Q+L+ CTW Sbjct: 282 ENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320 >SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 420 Score = 26.6 bits (56), Expect = 2.9 Identities = 10/49 (20%), Positives = 26/49 (53%) Frame = -1 Query: 528 VWIKLGKMLDLL*RKWEYYFQLNPTLHHQYRTLQQNFEGHEQYQQIHSL 382 +WI GK+ ++ + Y Q +P + Y+ +++++ H+ H++ Sbjct: 280 IWIIGGKLAIVVLVLFSYPLQCHPCRNSVYQAIRRSYSAHDMSDGYHAV 328 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 25.8 bits (54), Expect = 5.1 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +3 Query: 327 FESIGKRTPIAVRFSTVGGESGSADTVRDPRSFAVKFYTDDGVWDLVGNNT 479 F S+ + + FS G E +R F++K DGVW+L N T Sbjct: 1199 FPSVYSKDNPNLLFSMTGFEVRILPKIRQNEEFSLK----DGVWNLTDNRT 1245 >SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual Length = 665 Score = 25.8 bits (54), Expect = 5.1 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -3 Query: 403 VSADPLSPPTVENLTAIGVLLPMDSNTL 320 VS +P + +NLTAIGV P+D+N + Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167 >SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosaccharomyces pombe|chr 1|||Manual Length = 398 Score = 25.4 bits (53), Expect = 6.7 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = +1 Query: 58 TDQLINYKKTLKDSPGFIT-TKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRER 234 TDQ + K S ++ ++SG P+ + ++ +NGP+ ++++NF ++ +F + Sbjct: 101 TDQNESQASQAKQSSAQLSDSESGYPLDHEE-MRISEENGPSHIENLNFFSDIDNFSKTS 159 Query: 235 IPE 243 E Sbjct: 160 AEE 162 >SPBC25H2.03 |||vacuolar protein involved in phosphoinositide metabolism|Schizosaccharomyces pombe|chr 2|||Manual Length = 811 Score = 25.4 bits (53), Expect = 6.7 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = -2 Query: 173 PFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL*LMSWSVAGSLEAILYVPFLLCGV 6 P + T ++ L+P + L V+ P + + LE I Y+PFLL G+ Sbjct: 195 PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSIPDLEFISYLPFLLDGL 250 >SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1125 Score = 25.0 bits (52), Expect = 8.9 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 538 SLLSMDKTRENVGSLIKKMGVL 473 SL+ T E VGSLI+K+G L Sbjct: 637 SLIQKKTTDETVGSLIEKVGKL 658 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,757,107 Number of Sequences: 5004 Number of extensions: 57082 Number of successful extensions: 159 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 158 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 275671126 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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