Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0986
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   134   7e-33
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    28   1.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.2  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    27   2.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.1  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   5.1  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   6.7  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   6.7  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   8.9  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  134 bits (325), Expect = 7e-33
 Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
 Frame = +3

Query: 255 AKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRSFAVK 434
           AKG+GAFG FE T DITKY+   +F  +GK+TP+  RFSTVGGE G+ DT RDPR FA+K
Sbjct: 61  AKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALK 120

Query: 435 FYTDDGVWDLVGNNTPIFFIRDPT-FSRVLSILRREPCN 548
           FYTD+G++D+VGNNTP+FF+RDP  F   +   +R P N
Sbjct: 121 FYTDEGIFDMVGNNTPVFFLRDPAKFPLFIHTQKRNPQN 159



 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 26/47 (55%), Positives = 30/47 (63%)
 Frame = +1

Query: 112 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 252
           TT +G P+    A   VGK GP LLQD + +D    FDRERIPERVV
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVV 59



 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 484 FSL*EIQHFPEFYPYSEENPATHLKDPDMFWDFLDLRPETIHQLLYL 624
           F L +   FP F    + NP   +KD  MFWD+L    E+IHQ++ L
Sbjct: 138 FFLRDPAKFPLFIHTQKRNPQNDMKDATMFWDYLSQNAESIHQVMIL 184


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -3

Query: 544 QGSLLSMDKTRENVGSLIKKMGVLFPTKSHTPSSV*NFTAKLRGSRTVSADPLSPP 377
           + + LS  K  EN+ S+    G    + ++TPSSV + +  +  S     DP +PP
Sbjct: 12  KANTLSESKVSENLMSINSDSGT---SNANTPSSVTSNSKPVASSTAAKKDPNAPP 64


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 417 EGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 304
           E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 282 ENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/49 (20%), Positives = 26/49 (53%)
 Frame = -1

Query: 528 VWIKLGKMLDLL*RKWEYYFQLNPTLHHQYRTLQQNFEGHEQYQQIHSL 382
           +WI  GK+  ++   + Y  Q +P  +  Y+ +++++  H+     H++
Sbjct: 280 IWIIGGKLAIVVLVLFSYPLQCHPCRNSVYQAIRRSYSAHDMSDGYHAV 328


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 327  FESIGKRTPIAVRFSTVGGESGSADTVRDPRSFAVKFYTDDGVWDLVGNNT 479
            F S+  +    + FS  G E      +R    F++K    DGVW+L  N T
Sbjct: 1199 FPSVYSKDNPNLLFSMTGFEVRILPKIRQNEEFSLK----DGVWNLTDNRT 1245


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 403 VSADPLSPPTVENLTAIGVLLPMDSNTL 320
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 58  TDQLINYKKTLKDSPGFIT-TKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRER 234
           TDQ  +     K S   ++ ++SG P+  +  ++   +NGP+ ++++NF  ++ +F +  
Sbjct: 101 TDQNESQASQAKQSSAQLSDSESGYPLDHEE-MRISEENGPSHIENLNFFSDIDNFSKTS 159

Query: 235 IPE 243
             E
Sbjct: 160 AEE 162


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 173 PFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL*LMSWSVAGSLEAILYVPFLLCGV 6
           P + T  ++ L+P  +  L V+ P     +   +        LE I Y+PFLL G+
Sbjct: 195 PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSIPDLEFISYLPFLLDGL 250


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 538 SLLSMDKTRENVGSLIKKMGVL 473
           SL+    T E VGSLI+K+G L
Sbjct: 637 SLIQKKTTDETVGSLIEKVGKL 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,107
Number of Sequences: 5004
Number of extensions: 57082
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)