Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0986
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 114 5e-26
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 111 3e-25
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 108 3e-24
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 30 1.3
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 5.2
09_04_0068 - 14297861-14297919,14298368-14298423,14298454-142985... 28 6.9
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 28 6.9
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 28 6.9
02_04_0493 + 23435395-23436003 28 6.9
05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194 27 9.2
04_04_0406 + 24978845-24978970,24979073-24979142,24979541-249795... 27 9.2
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 114 bits (275), Expect = 5e-26
Identities = 56/111 (50%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +3
Query: 255 AKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRSFAVK 434
A+GA A G+FEVTHDIT + A + G +TP+ VRFSTV E GS +T+RDPR FA+K
Sbjct: 66 ARGASAKGFFEVTHDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIK 125
Query: 435 FYTDDGVWDLVGNNTPIFFIRD-PTFSRVLSILRREPCNTSERSRHVLGLF 584
FYT +G WDLVGNN P+FFIRD F ++ L+ P + + + +L F
Sbjct: 126 FYTREGNWDLVGNNFPVFFIRDGMKFPDMVHSLKPNPKSHVQENWRILDFF 176
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/47 (53%), Positives = 34/47 (72%)
Frame = +1
Query: 112 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 252
+T SGAPV TVG GP LL+D + ++++++FDRERIPERVV
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVV 64
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 508 FPEFYPYSEENPATHLKDPDMFWDFLDLRPETIHQLLYL 624
FP+ + NP +H+++ DF PE++H +L
Sbjct: 151 FPDMVHSLKPNPKSHVQENWRILDFFSHHPESLHMFTFL 189
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 111 bits (268), Expect = 3e-25
Identities = 50/82 (60%), Positives = 61/82 (74%)
Frame = +3
Query: 255 AKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRSFAVK 434
A+GA A G+FE THD+T + A S G +TP+ VRFSTV E GS +T+RDPR FAVK
Sbjct: 78 ARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVK 137
Query: 435 FYTDDGVWDLVGNNTPIFFIRD 500
FYT +G WDL+GNN P+FFIRD
Sbjct: 138 FYTREGNWDLLGNNFPVFFIRD 159
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +1
Query: 112 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 252
TT +GAPV TVG GP LL+D + +++++ F RERIPERVV
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVV 76
Score = 30.7 bits (66), Expect = 0.98
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 508 FPEFYPYSEENPATHLKDPDMFWDFLDLRPETIHQLLYL 624
FP+ + NP +H+++ +DFL PE++H +L
Sbjct: 163 FPDVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFL 201
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 108 bits (260), Expect = 3e-24
Identities = 53/111 (47%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
Frame = +3
Query: 255 AKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRSFAVK 434
A+GA A G+FEVTHDI+ + A + G +TP+ VRFSTV E GS +T+RDPR FAVK
Sbjct: 66 ARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVK 125
Query: 435 FYTDDGVWDLVGNNTPIFFIRD-PTFSRVLSILRREPCNTSERSRHVLGLF 584
FYT +G +DLVGNN P+FFIRD F ++ + P + + ++ F
Sbjct: 126 FYTREGNFDLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFF 176
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +1
Query: 106 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 252
F TT SGAPV + TVG+ GP LL+D + +++++ FDRERIPERVV
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVV 64
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 504 LDLL*RKWEYYFQLNPTLHHQYRTLQQNFEGHEQYQQIHSLH 379
+D+L K + QL H Q + LQQ+ H+Q Q ++ LH
Sbjct: 376 IDMLIAKIAHLQQLQQQGHSQQQQLQQSTISHQQAQSLNQLH 417
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 203 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 93
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
>09_04_0068 -
14297861-14297919,14298368-14298423,14298454-14298503,
14298773-14298824,14299546-14299677,14300334-14300611
Length = 208
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 544 QGSLLSMDKTRENVGSLIKKMGVLFPTKSHTPSSV*NFTAKLRGSRTVSADPLS 383
+GS + R G + L P SH+P S+ F +++R A PL+
Sbjct: 51 KGSRAERTRERRQAGEQQAIVVALIPRLSHSPRSLHEFLSQMRHGEAEGARPLA 104
>04_04_1157 - 31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 27.9 bits (59), Expect = 6.9
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +3
Query: 240 RTSGTAKGAGAFGYFEVTHDITKYSAAKV-FESIGKRTPIAVRFSTVGGESGSADTVRDP 416
+T + K AG FGY + + + KV + G V T+ G DT+ +
Sbjct: 784 KTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-----VVLLETLAGRPNYDDTLEED 838
Query: 417 RSFAVKFYTDDGVWDLVGNNTPIFFIRDP 503
K Y + W+L NN P+ + DP
Sbjct: 839 -----KIYIFEWAWELYENNNPLGLV-DP 861
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 27.9 bits (59), Expect = 6.9
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +3
Query: 240 RTSGTAKGAGAFGYFEVTHDITKYSAAKV-FESIGKRTPIAVRFSTVGGESGSADTVRDP 416
+T + K AG FGY + + + KV + G V T+ G DT+ +
Sbjct: 748 KTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-----VVLLETLAGRPNYDDTLEED 802
Query: 417 RSFAVKFYTDDGVWDLVGNNTPIFFIRDP 503
K Y + W+L NN P+ + DP
Sbjct: 803 -----KIYIFEWAWELYENNNPLGIV-DP 825
>02_04_0493 + 23435395-23436003
Length = 202
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 203 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL 78
R L SC GP PT C ++I P+L +PG++ V L
Sbjct: 111 RCLLSC--CGPMDPTSCTDLVIDLADPELWYCRPGDNHWVKL 150
>05_03_0075 + 8146249-8146314,8146406-8146488,8148137-8148194
Length = 68
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 483 WEYYFQLNPTLHHQYRTLQQNFEGHEQYQQIHSLHQLL 370
W Q P + Y T++++ GHE YQ+ LL
Sbjct: 19 WPQKLQPKPIVTDVYSTVKRDGHGHEMYQEFRFRRWLL 56
>04_04_0406 +
24978845-24978970,24979073-24979142,24979541-24979556,
24979813-24979930,24980015-24980137,24980249-24980408,
24980470-24980546,24980635-24980687,24981263-24981317,
24981664-24981858
Length = 330
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 396 ADTVRDPRSFAVKFYTDDGVWDLVGNNTPIFFIR 497
AD + D F V DGVWD++ N + F+R
Sbjct: 230 ADQLTDDTEFLV--IACDGVWDVLANQAVVDFVR 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,445,476
Number of Sequences: 37544
Number of extensions: 360148
Number of successful extensions: 847
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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