Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0986
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)                 28   7.1  
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)
          Length = 261

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 104 PGESFKVFL*LMSWSVAGSLEAILYVP 24
           P +SF   L +M+W V GSL  IL +P
Sbjct: 129 PSQSFSNKLVIMAWVVGGSLGIILTLP 155


>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 49  DPATDQLINYKKTLKDSPGFITTKSGAPVGIKTAIQTVGKN 171
           +PA    +NY  TL  S   + T++   V ++ A +   K+
Sbjct: 416 EPAASDFVNYFSTLNKSHTMLATRASDKVSVRLATRAYSKH 456


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 16   SKKGTYKMASRDPATDQLINYKKTLKDSPGFITTKSGAPVGIKTAIQTVGKNG 174
            S + T  + +  P TD  I  K T KD+   ++T      G  T  +T G NG
Sbjct: 1030 SPETTAAVTTASPTTDAPITNKPTTKDAIPDVSTVKPTTDGNSTIGKTSGTNG 1082


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,205,334
Number of Sequences: 59808
Number of extensions: 420596
Number of successful extensions: 1016
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)