Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0986
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.8  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 447 HQYRTLQQNFEGHEQYQQIHSLHQLLRI*QQS 352
           HQ +  QQ+ + HEQ+       Q     QQS
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQS 217



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 450 HHQYRTLQQNFEGHEQYQQIHSLHQLLRI*QQS 352
           H Q +  Q   +  +Q+ Q H  H + +  QQS
Sbjct: 178 HMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQS 210


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 590 RSKKSQNMSGSFRCVAGFSSEYG*NSGKCWISYK 489
           R KK       F  V+  SSEY   + + W  YK
Sbjct: 608 RGKKEGMPFQLFLYVSPVSSEYNQYNSRIWGGYK 641


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 590 RSKKSQNMSGSFRCVAGFSSEYG*NSGKCWISYK 489
           R KK       F  V+  SSEY   + + W  YK
Sbjct: 608 RGKKEGMPFQLFLYVSPVSSEYNQYNSRIWGGYK 641


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,828
Number of Sequences: 438
Number of extensions: 3914
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)