Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0983
         (715 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RKU4 Cluster: Synthetic antigen of P.falciparum, puta...    36   0.99 
UniRef50_Q68F69 Cluster: LOC446275 protein; n=4; Xenopus|Rep: LO...    36   1.3  
UniRef50_Q9FN19 Cluster: Arabidopsis thaliana genomic DNA, chrom...    35   1.7  
UniRef50_Q6NW16 Cluster: Arginine/serine-rich coiled-coil 2; n=3...    35   1.7  
UniRef50_UPI00006CA848 Cluster: hypothetical protein TTHERM_0068...    33   9.2  
UniRef50_Q16R52 Cluster: U2 snrnp auxiliary factor, small subuni...    33   9.2  

>UniRef50_Q7RKU4 Cluster: Synthetic antigen of P.falciparum,
           putative; n=3; Plasmodium (Vinckeia)|Rep: Synthetic
           antigen of P.falciparum, putative - Plasmodium yoelii
           yoelii
          Length = 486

 Score = 35.9 bits (79), Expect = 0.99
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 676 NSNERTERFIVFSRAYVYVRSDVDGTFVSCVRS 578
           +SNE  E F +F RA+  + +DVD  F  C  S
Sbjct: 301 DSNENVEDFFIFDRAFSNISNDVDSMFTECANS 333


>UniRef50_Q68F69 Cluster: LOC446275 protein; n=4; Xenopus|Rep:
           LOC446275 protein - Xenopus laevis (African clawed frog)
          Length = 893

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = +1

Query: 421 RNDTRSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRD-VKRSRTVPTENERTKR 597
           R+D+ S++  +   S    +++ K  +       R+  +SSR+   RSR+  +   R+K 
Sbjct: 215 RSDSSSKKRKHSPKSKRKSKEKKKKRSPSASPKQRDVSSSSREETSRSRS-RSSPPRSKS 273

Query: 598 TFRQHLNARKRTPERKR*ISP 660
              +H +A K +PERKR +SP
Sbjct: 274 DRAKHSSAAKESPERKRSVSP 294


>UniRef50_Q9FN19 Cluster: Arabidopsis thaliana genomic DNA,
           chromosome 5, TAC clone:K8K14; n=5; Viridiplantae|Rep:
           Arabidopsis thaliana genomic DNA, chromosome 5, TAC
           clone:K8K14 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 613

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +1

Query: 415 VDRNDTRSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTK 594
           ++ N + SE  ++E  S+  P D +         +LREK    RD+++ R    EN+  K
Sbjct: 63  MEANLSNSEVDIDEDFSFFQPLDLISKDVKELQDMLREKKRKERDMEKERDRSKEND--K 120

Query: 595 RTFRQHLNARKRTPERKR 648
              R+H   R R  E+ R
Sbjct: 121 GVEREHEGDRNRAKEKDR 138


>UniRef50_Q6NW16 Cluster: Arginine/serine-rich coiled-coil 2; n=37;
           Euteleostomi|Rep: Arginine/serine-rich coiled-coil 2 -
           Homo sapiens (Human)
          Length = 434

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 24/72 (33%), Positives = 38/72 (52%)
 Frame = +1

Query: 433 RSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKRTFRQH 612
           +SE   ++ +S    R+RL S+ NG D   R++  SSR    SR+   E     R+ R+ 
Sbjct: 84  KSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRS-RER 142

Query: 613 LNARKRTPERKR 648
             +R R+ ERK+
Sbjct: 143 KKSRSRSRERKK 154


>UniRef50_UPI00006CA848 Cluster: hypothetical protein
           TTHERM_00688760; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00688760 - Tetrahymena
           thermophila SB210
          Length = 209

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +1

Query: 436 SERVLNE*NSYGLPRDRL-KSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKRTFR-Q 609
           SE+VL E ++  L    L ++T N CD L REK    R+ K+   V  E E  +   + Q
Sbjct: 2   SEKVLQEFSAKILKAKNLYEATKNQCDVLRREKEKLEREYKQIYEVRKEAELQEENLKYQ 61

Query: 610 HLNARKRTPE 639
           + N++K   E
Sbjct: 62  YENSKKSNKE 71


>UniRef50_Q16R52 Cluster: U2 snrnp auxiliary factor, small subunit;
           n=2; Aedes aegypti|Rep: U2 snrnp auxiliary factor, small
           subunit - Aedes aegypti (Yellowfever mosquito)
          Length = 509

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 469 GLPRDRLKSTTNGCDALLREKCTS-SRDVKRSRTVPTENERTKRTFRQHLNARKRTPERK 645
           GL ++R +S  +   +  R   +  SR   RSR    E +R +   ++H  +R R+PERK
Sbjct: 420 GLRKNRSRSRESADSSRNRSSSSRRSRSRNRSRHRSRERDRREEKQKRHSRSRSRSPERK 479

Query: 646 R 648
           +
Sbjct: 480 K 480


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,081,027
Number of Sequences: 1657284
Number of extensions: 11826837
Number of successful extensions: 26546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26509
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)