Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0983
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941...    31   1.2  
11_02_0123 - 8550193-8550213,8550434-8550682,8550787-8550834,855...    30   1.6  
03_06_0640 + 35230664-35231065,35231957-35232202                       30   2.1  
01_06_0922 - 33022709-33023545                                         29   2.8  

>01_04_0068 +
           15693131-15693533,15693604-15693803,15693879-15694162,
           15694251-15694428
          Length = 354

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +1

Query: 487 LKSTTNGCDALLREKCTSSRDVKRSRTV-PTE-NERTKRTFRQHLNARKRTPERKR*ISP 660
           + S+++G        CTS   V  S T  P + NE  +R  ++ L  + R+PE+K  I P
Sbjct: 97  ISSSSSGSSTSTVSACTSQDKVSPSSTACPHKGNEEGEREVKRQL--KPRSPEKKIPIDP 154

Query: 661 FVHSSFAGL 687
            V + F G+
Sbjct: 155 SVKNFFKGM 163


>11_02_0123 -
           8550193-8550213,8550434-8550682,8550787-8550834,
           8550939-8551025,8551104-8551184,8551264-8551368,
           8551464-8551556,8551635-8551715,8551794-8551895,
           8552144-8552224,8552304-8552405,8552499-8552834,
           8552920-8553006,8553275-8553493,8553575-8553769
          Length = 628

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 487 LKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR*ISPFV 666
           + +T+N    +   KCT+++D + + ++P E    K+   + L  R +T +R    S   
Sbjct: 366 VNATSNYVQQVCSVKCTNAKDRRGNPSIPYERTNAKQLSLEKLAQRTKTSQRNAESSLVT 425

Query: 667 H 669
           H
Sbjct: 426 H 426


>03_06_0640 + 35230664-35231065,35231957-35232202
          Length = 215

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 458 YSFRTRSDRVSFRSTHSDGIIKLITHALKIPKKNFL-IRVRPDASQRRIFSF 306
           YS R R+ R    ST+ DGI  L+T+  K    + L +R+  D    R  SF
Sbjct: 156 YSIRKRNSRTGLPSTYYDGIYLLVTYFTKPESLDALQMRLNADDDVIRSTSF 207


>01_06_0922 - 33022709-33023545
          Length = 278

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 541 SRDVKRSRTVPTENERTKRTFRQHLN-ARKRTPERKR*ISP 660
           SR  + S + P   E+  R+ R+  + A KRTPE++R  SP
Sbjct: 159 SRSARASASPPPRREQRDRSVRRSPSPAAKRTPEQRRAASP 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,973,731
Number of Sequences: 37544
Number of extensions: 321483
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)