Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0983
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4) 38 0.011
SB_47253| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_40022| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_15711| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_3184| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_57385| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_52963| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_31920| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_28366| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8) 37 0.014
SB_25308| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_24745| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_2618| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_54119| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.019
SB_34064| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_28521| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_34332| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 29 2.8
SB_5204| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.014) 29 4.9
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 28 6.5
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5) 28 6.5
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13) 28 6.5
SB_21326| Best HMM Match : Myosin_head (HMM E-Value=5e-05) 28 8.6
>SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/29 (62%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++L +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSLDHSKTRTHVRLLGPCFKTG 45
>SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)
Length = 402
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F + ++ +S TRTH RLLGPC+KTG
Sbjct: 247 AFTFISPRSFDHSKTRTHVRLLGPCFKTG 275
>SB_47253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_40022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_15711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_3184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_57385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_52963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 141 AFTFITPRSFGHSKTRTHVRLLGPCFKTG 169
>SB_31920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_28366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)
Length = 411
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 260 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 288
>SB_25308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_24745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_2618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 110 AFQF-NVKNL*NSMTRTHARLLGPCYKTG 193
AF F ++ +S TRTH RLLGPC+KTG
Sbjct: 17 AFTFITPRSFDHSKTRTHVRLLGPCFKTG 45
>SB_54119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 36.7 bits (81), Expect = 0.019
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 140 NSMTRTHARLLGPCYKTG 193
+S TRTH RLLGPC+KTG
Sbjct: 28 HSKTRTHVRLLGPCFKTG 45
>SB_34064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 140 NSMTRTHARLLGPCYKT 190
+S TRTH RLLGPC+KT
Sbjct: 352 HSETRTHVRLLGPCFKT 368
>SB_28521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2
Query: 204 ALAGPVL*HGPRSLACVRVIE 142
A + P L HGPRSL CVRV E
Sbjct: 61 ASSDPCLKHGPRSLTCVRVFE 81
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 445 VLNE*NSYGLPRDRLKSTTNGCDAL--LREKCTSSRDVKRSRTVPTENERTKRTFRQHLN 618
+++E +++ L + LK + D L L+ K SRD RSR ER +R+ +
Sbjct: 326 IIHELDNFELDSEGLKEILDKLDGLGRLKRKADRSRDRSRSRESQRSRERVERSQSRSCE 385
Query: 619 ARK--RTPERKR 648
K R ER+R
Sbjct: 386 YHKARRAKERER 397
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +1
Query: 478 RDRLKSTTNGCDAL-LREKCTSSRDVK---RSRTVPTENERTKRT 600
RD T+ G D +R K T S+ VK RSR +PTE E+T R+
Sbjct: 406 RDSHSRTSEGGDKRDIRAKETGSQKVKSKIRSRDLPTEKEKTSRS 450
>SB_34332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1
Query: 193 TRLVTRTKESSMCAS 149
TRL TRTKES+MCAS
Sbjct: 35 TRLETRTKESNMCAS 49
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 478 RDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 648
R R +S++ + K S RD RSR + ++ R +++ +R R+ ER+R
Sbjct: 276 RHRSRSSSLSSRRRSKHKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRR 332
>SB_5204| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.014)
Length = 351
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 523 REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPER 642
R +C +R +KR R + T + T + FR+ L+ ++ ER
Sbjct: 11 RLRCKITRAIKRIRNLTTTDTTTAKRFRKELDQLRKDFER 50
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 556 RSRTVPTENERTKRTFRQHLNARKRTPERKR 648
+SRT P R++ ++H ++ RTP R R
Sbjct: 67 KSRTPPRHRRRSRSPNKKHSRSKSRTPPRHR 97
>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
Length = 281
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 74 ERTSSVRLHFRYAFQFNVKNL*NSMTRTHARLLGPCYK 187
+R+S +RLH R +KN +++TR +LL P +K
Sbjct: 235 QRSSDLRLHSRKQPDIPIKNQLSNITRLLEQLLNPDHK 272
>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
Length = 1389
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = +1
Query: 409 ECVDRNDTRSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENER 588
EC D +T+SER+L GL ++ L T++ EKC S+ R ++
Sbjct: 432 ECTDSGETKSERLLEV--ELGL-KESLADTSHKLSENASEKCQSTESSARKVSLDPSLNN 488
Query: 589 TKRTFRQHLNARKR 630
+R +++ + + +
Sbjct: 489 LERQDKKNQSVKDK 502
>SB_21326| Best HMM Match : Myosin_head (HMM E-Value=5e-05)
Length = 469
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 250 GLVRVCLNVCDDTVSGTRRTRLVTRTKE 167
GL ++C+N+C +T+ TR+ T+E
Sbjct: 121 GLNQICVNLCAETIQHFYNTRIFKTTEE 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,592,100
Number of Sequences: 59808
Number of extensions: 412526
Number of successful extensions: 1077
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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