Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0983
         (715 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC067773-1|AAH67773.1|  434|Homo sapiens arginine/serine-rich co...    35   0.25 
BC008684-1|AAH08684.2|  434|Homo sapiens arginine/serine-rich co...    35   0.25 
AB212664-1|BAE93762.1|  434|Homo sapiens hypothetical protein pr...    35   0.25 
AL513550-4|CAI17194.1|  805|Homo sapiens RP11-98I9.2 protein.          30   9.5  
AL080186-1|CAB45767.1|  299|Homo sapiens hypothetical protein pr...    30   9.5  
AF314185-1|AAL76164.1|  283|Homo sapiens SR rich protein protein.      30   9.5  
AF314184-1|AAL76163.1|  805|Homo sapiens SR rich protein protein.      30   9.5  

>BC067773-1|AAH67773.1|  434|Homo sapiens arginine/serine-rich
           coiled-coil 2 protein.
          Length = 434

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 24/72 (33%), Positives = 38/72 (52%)
 Frame = +1

Query: 433 RSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKRTFRQH 612
           +SE   ++ +S    R+RL S+ NG D   R++  SSR    SR+   E     R+ R+ 
Sbjct: 84  KSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRS-RER 142

Query: 613 LNARKRTPERKR 648
             +R R+ ERK+
Sbjct: 143 KKSRSRSRERKK 154


>BC008684-1|AAH08684.2|  434|Homo sapiens arginine/serine-rich
           coiled-coil 2 protein.
          Length = 434

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 24/72 (33%), Positives = 38/72 (52%)
 Frame = +1

Query: 433 RSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKRTFRQH 612
           +SE   ++ +S    R+RL S+ NG D   R++  SSR    SR+   E     R+ R+ 
Sbjct: 84  KSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRS-RER 142

Query: 613 LNARKRTPERKR 648
             +R R+ ERK+
Sbjct: 143 KKSRSRSRERKK 154


>AB212664-1|BAE93762.1|  434|Homo sapiens hypothetical protein
           protein.
          Length = 434

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 24/72 (33%), Positives = 38/72 (52%)
 Frame = +1

Query: 433 RSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKRTFRQH 612
           +SE   ++ +S    R+RL S+ NG D   R++  SSR    SR+   E     R+ R+ 
Sbjct: 84  KSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRS-RER 142

Query: 613 LNARKRTPERKR 648
             +R R+ ERK+
Sbjct: 143 KKSRSRSRERKK 154


>AL513550-4|CAI17194.1|  805|Homo sapiens RP11-98I9.2 protein.
          Length = 805

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +1

Query: 421 RNDTRSERVLNE*NSYGLP-RDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKR 597
           R+ + S R+  E N   +  RDR +S  N  +   R   + SR+ +RSR+  + + RT R
Sbjct: 572 RSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRS-RSRDRRTNR 630

Query: 598 TFRQHLNARKRTPERKR*ISPFVH 669
             R     R++  +++  +S   H
Sbjct: 631 ASRSRSRDRRKIDDQRGNLSGNSH 654


>AL080186-1|CAB45767.1|  299|Homo sapiens hypothetical protein
           protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +1

Query: 421 RNDTRSERVLNE*NSYGLP-RDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKR 597
           R+ + S R+  E N   +  RDR +S  N  +   R   + SR+ +RSR+  + + RT R
Sbjct: 66  RSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRS-RSRDRRTNR 124

Query: 598 TFRQHLNARKRTPERKR*ISPFVH 669
             R     R++  +++  +S   H
Sbjct: 125 ASRSRSRDRRKIDDQRGNLSGNSH 148


>AF314185-1|AAL76164.1|  283|Homo sapiens SR rich protein protein.
          Length = 283

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +1

Query: 421 RNDTRSERVLNE*NSYGLP-RDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKR 597
           R+ + S R+  E N   +  RDR +S  N  +   R   + SR+ +RSR+  + + RT R
Sbjct: 50  RSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRS-RSRDRRTNR 108

Query: 598 TFRQHLNARKRTPERKR*ISPFVH 669
             R     R++  +++  +S   H
Sbjct: 109 ASRSRSRDRRKIDDQRGNLSGNSH 132


>AF314184-1|AAL76163.1|  805|Homo sapiens SR rich protein protein.
          Length = 805

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +1

Query: 421 RNDTRSERVLNE*NSYGLP-RDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKR 597
           R+ + S R+  E N   +  RDR +S  N  +   R   + SR+ +RSR+  + + RT R
Sbjct: 572 RSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRS-RSRDRRTNR 630

Query: 598 TFRQHLNARKRTPERKR*ISPFVH 669
             R     R++  +++  +S   H
Sbjct: 631 ASRSRSRDRRKIDDQRGNLSGNSH 654


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,943,781
Number of Sequences: 237096
Number of extensions: 1612916
Number of successful extensions: 3199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3199
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)