Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0983
         (715 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023893-1|ABA81827.1|  294|Drosophila melanogaster LP21102p pro...    29   6.3  
AE014298-485|AAF45841.1|  294|Drosophila melanogaster CG14422-PA...    29   6.3  
AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ...    29   6.3  
AY052096-1|AAK93520.1|  574|Drosophila melanogaster SD04526p pro...    29   8.3  
AE014296-3703|AAN12199.1|  574|Drosophila melanogaster CG32452-P...    29   8.3  
AE014296-3702|AAN12198.1|  574|Drosophila melanogaster CG32452-P...    29   8.3  

>BT023893-1|ABA81827.1|  294|Drosophila melanogaster LP21102p
           protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 406 SECVDRNDTRSERVLNE*NSYGLPRDRLKSTTNGCDAL-LREKCTSSRDVKRSRTVPTEN 582
           SE +   + R ++ LNE     L   R +S  +   AL  R +    +  KR R    + 
Sbjct: 198 SELMREIELRRQKELNEQLRKQLASSRRRSNQSRRRALNKRRRALRRQQQKRRRLSRRQQ 257

Query: 583 ERTKRTFRQHLNARKRTPERKR 648
           ++ +   R+H NAR+R     R
Sbjct: 258 QKRRSQNRRHRNARRRQRRNNR 279


>AE014298-485|AAF45841.1|  294|Drosophila melanogaster CG14422-PA
           protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 406 SECVDRNDTRSERVLNE*NSYGLPRDRLKSTTNGCDAL-LREKCTSSRDVKRSRTVPTEN 582
           SE +   + R ++ LNE     L   R +S  +   AL  R +    +  KR R    + 
Sbjct: 198 SELMREIELRRQKELNEQLRKQLASSRRRSNQSRRRALNKRRRALRRQQQKRRRLSRRQQ 257

Query: 583 ERTKRTFRQHLNARKRTPERKR 648
           ++ +   R+H NAR+R     R
Sbjct: 258 QKRRSQNRRHRNARRRQRRNNR 279


>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
           protein.
          Length = 1286

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 210 TVSSQTFKQTRTSPRCTAATTDASHSRPH*GRKRENTTLTCVGP 341
           T ++ T + T T+PR T  TT    SRP     R  TT +  GP
Sbjct: 563 TTTTSTSRPTTTTPRSTTTTTT---SRPTTTTPRSTTTTSTSGP 603


>AY052096-1|AAK93520.1|  574|Drosophila melanogaster SD04526p
           protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 403 PSEC-VDRNDTRSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTE 579
           PSE  ++R  TRS    NE  S    R   +S    C    R +  S  + K+  + PT 
Sbjct: 187 PSENKINRRSTRSTS--NE-KSATQRRSVSRSHIPRCRGRRRSQSRSPTEPKQRSSPPTH 243

Query: 580 NERTKRTFRQHLNARKRTPERKR 648
             R+  + R+H+ +RKR   R R
Sbjct: 244 KRRSSPS-REHIRSRKRCYSRDR 265


>AE014296-3703|AAN12199.1|  574|Drosophila melanogaster CG32452-PB,
           isoform B protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 403 PSEC-VDRNDTRSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTE 579
           PSE  ++R  TRS    NE  S    R   +S    C    R +  S  + K+  + PT 
Sbjct: 187 PSENKINRRSTRSTS--NE-KSATQRRSVSRSHIPRCRGRRRSQSRSPTEPKQRSSPPTH 243

Query: 580 NERTKRTFRQHLNARKRTPERKR 648
             R+  + R+H+ +RKR   R R
Sbjct: 244 KRRSSPS-REHIRSRKRCYSRDR 265


>AE014296-3702|AAN12198.1|  574|Drosophila melanogaster CG32452-PA,
           isoform A protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 403 PSEC-VDRNDTRSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTE 579
           PSE  ++R  TRS    NE  S    R   +S    C    R +  S  + K+  + PT 
Sbjct: 187 PSENKINRRSTRSTS--NE-KSATQRRSVSRSHIPRCRGRRRSQSRSPTEPKQRSSPPTH 243

Query: 580 NERTKRTFRQHLNARKRTPERKR 648
             R+  + R+H+ +RKR   R R
Sbjct: 244 KRRSSPS-REHIRSRKRCYSRDR 265


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,522,997
Number of Sequences: 53049
Number of extensions: 559825
Number of successful extensions: 1459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)