Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0983
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl...    29   4.4  
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl...    29   4.4  

>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
            methyltransferase-likeprotein 1, isoform b protein.
          Length = 1590

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 523  REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR*ISP 660
            R +    R   RSR+V  +N + ++      N R+R+P R R  SP
Sbjct: 1128 RRRFNGRRSRSRSRSVSPQNYKRRKLDEHDNNHRQRSPIRDRHTSP 1173


>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
            methyltransferase-likeprotein 1, isoform a protein.
          Length = 1604

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 523  REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR*ISP 660
            R +    R   RSR+V  +N + ++      N R+R+P R R  SP
Sbjct: 1142 RRRFNGRRSRSRSRSVSPQNYKRRKLDEHDNNHRQRSPIRDRHTSP 1187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,898,201
Number of Sequences: 27780
Number of extensions: 292812
Number of successful extensions: 818
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)