Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0983
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 35 0.047
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 31 1.0
At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing... 29 2.3
At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger) fa... 29 4.0
At4g16000.1 68417.m02428 expressed protein 29 4.0
At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr... 29 4.0
At5g34900.1 68418.m04114 Ulp1 protease family protein contains P... 28 7.1
At3g29600.1 68416.m03720 hypothetical protein 28 7.1
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 27 9.3
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 35.1 bits (77), Expect = 0.047
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +1
Query: 415 VDRNDTRSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRDVKRSRTVPTENERTK 594
++ N + SE ++E S+ P D + +LREK RD+++ R EN+ K
Sbjct: 63 MEANLSNSEVDIDEDFSFFQPLDLISKDVKELQDMLREKKRKERDMEKERDRSKEND--K 120
Query: 595 RTFRQHLNARKRTPERKR 648
R+H R R E+ R
Sbjct: 121 GVEREHEGDRNRAKEKDR 138
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -3
Query: 605 RNVRFVRSFSVGTVRERLTSREDVHFSLSNASHPFVVDLRRSRGRPYEFYSFRTR 441
RN+ FVR F T +E L + + + + S V+D RG+ Y F F+TR
Sbjct: 408 RNI-FVRGFGWDTTQENLKTAFESYGEIEECS--VVMDKDTGRGKGYGFVMFKTR 459
>At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein weak
similarity to SP|Q09717 Ran-specific GTPase-activating
protein 1 (Ran binding protein 1) (RANBP1) (Spi1-binding
protein) {Schizosaccharomyces pombe}; contains Pfam
profile PF00638: RanBP1 domain
Length = 440
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 295 CGRECDASVVAAVHLGLVRVCLNVCDDTVSGTRRT 191
CG+ D V A +V NVC++ V GT +T
Sbjct: 148 CGKSADVQVAATEVAQMVSCDTNVCNNAVEGTDQT 182
>At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 545
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 605 RNVRFVRSFSVGTVRERLTSREDV 534
RNVRF R+ SVG +R+R+ R +
Sbjct: 261 RNVRFSRTLSVGRLRDRVLRRSSL 284
>At4g16000.1 68417.m02428 expressed protein
Length = 89
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -3
Query: 569 TVRERLTSREDVHFSLSNASHPFVVD---LRRSRGRP 468
TVRE + SR+ H + PFV + RS+GRP
Sbjct: 33 TVREPVASRQTEHIHFFGGARPFVGNPNPFERSKGRP 69
>At1g51160.1 68414.m05752 synbindin, putative similar to
Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
musculus]
Length = 169
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 476 GRPYEFYSFRTRSDRVSFRSTHSDGIIKLITH 381
G+ F+SFRT + ++SF T S I L+TH
Sbjct: 88 GQGCSFHSFRTNTYKLSFMETPSGIKIILVTH 119
>At5g34900.1 68418.m04114 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At4g04010,
At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
At2g15190, At3g47260, At3g29210, At2g02210, At3g32900
Length = 767
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 490 KSTTNGCDALLREKCTSSRDVKRSRTVPTENERTKRTF--RQHLNARKRTPERKR 648
+S+T + L E +D KRS EN+R K + +L RK+ P +++
Sbjct: 415 RSSTPNFNILSEESLDVQKDKKRSSRGRNENKRVKPSVHAEDNLKTRKQVPRKRQ 469
>At3g29600.1 68416.m03720 hypothetical protein
Length = 164
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +1
Query: 397 MIPSECVDRNDTRSERVLNE*NSYGLPRDRLKSTTNGCDALLREKCTSSRDVKRSRTVP 573
++ S+ DR+ S+R N G T D + REKC+ K RT P
Sbjct: 10 LVGSDRPDRSSDGSDRTDQSSNGIGRSSHETGRTDRSSDGMDREKCSRKHKDKCIRTHP 68
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 577 ENERTKRTFRQHLNARKRTPERKR 648
E E T+R R+ ARKR ERKR
Sbjct: 471 EEEETERKKREEEEARKREEERKR 494
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,801,866
Number of Sequences: 28952
Number of extensions: 260753
Number of successful extensions: 647
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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