Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0978
         (546 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.33 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    24   0.76 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    24   0.76 
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    24   0.76 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    24   0.76 
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   9.3  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 351 CSAGRVCEINEHGDAMCNCIKXCPYETDSRRMVCANFNETWQSDCE 488
           C  G VC I++ G  +C+    CP  T+         NE   + C+
Sbjct: 385 CQNGGVCRISDGGGYICD----CPSGTNGTNCEIDTINECDSNPCK 426


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 539 DHGTDQSCRGKASLA--VYFAIRLPGFVEVCAHHASGVCLVGTXLDAVTHGVSVFVDFAD 366
           D  TD+SCR  A LA  V  A  +  +     HH        + + A +  ++V   F  
Sbjct: 44  DAATDKSCRYTAGLAANVTPADSMVNYTLGQHHHNGAAVSAASSVSAASASMAVAAQFYH 103

Query: 365 TSCAAV 348
            + +AV
Sbjct: 104 QAASAV 109


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 539 DHGTDQSCRGKASLA--VYFAIRLPGFVEVCAHHASGVCLVGTXLDAVTHGVSVFVDFAD 366
           D  TD+SCR  A LA  V  A  +  +     HH        + + A +  ++V   F  
Sbjct: 103 DAATDKSCRYTAGLAANVTPADSMVNYTLGQHHHNGAAVSAASSVSAASASMAVAAQFYH 162

Query: 365 TSCAAV 348
            + +AV
Sbjct: 163 QAASAV 168


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 539 DHGTDQSCRGKASLA--VYFAIRLPGFVEVCAHHASGVCLVGTXLDAVTHGVSVFVDFAD 366
           D  TD+SCR  A LA  V  A  +  +     HH        + + A +  ++V   F  
Sbjct: 44  DAATDKSCRYTAGLAANVTPADSMVNYTLGQHHHNGAAVSAASSVSAASASMAVAAQFYH 103

Query: 365 TSCAAV 348
            + +AV
Sbjct: 104 QAASAV 109


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 539 DHGTDQSCRGKASLA--VYFAIRLPGFVEVCAHHASGVCLVGTXLDAVTHGVSVFVDFAD 366
           D  TD+SCR  A LA  V  A  +  +     HH        + + A +  ++V   F  
Sbjct: 103 DAATDKSCRYTAGLAANVTPADSMVNYTLGQHHHNGAAVSAASSVSAASASMAVAAQFYH 162

Query: 365 TSCAAV 348
            + +AV
Sbjct: 163 QAASAV 168


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 287 LVEKVVNSGYFASWYRFSSKLS 222
           L+ ++V+  ++ SW    SKLS
Sbjct: 328 LILRLVSVCFYGSWINEESKLS 349


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,614
Number of Sequences: 336
Number of extensions: 2010
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)