Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0978
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.4  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   2.4  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   3.2  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.6  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   9.6  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   9.6  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 205 IEHGMSESLDEKRYHEAK*P-ELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKST 381
           +   ++++ + + YH +  P + +TF+  +L  R+  K  +W  L   S+ +  V  K+T
Sbjct: 275 VSRSLNDATNMETYHWSPFPPQFSTFNDNALRLRIYYKPKSW--LPKNSSCSLSVDVKAT 332

Query: 382 NTET 393
             ET
Sbjct: 333 LLET 336


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +1

Query: 304 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRXVPTRQTPDAWCAQTSTKPGNRI 483
           +K     W +    S A+Q     S  T      A R  P  Q  D+W ++    P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183

Query: 484 AKY 492
           ++Y
Sbjct: 184 SQY 186


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 431 CLVGTXLDAVTHGVSVFVDFADT-SC 357
           CL+ + LD +T G+S F++  D  SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 351  CSAGRVCEINEHGDAMCNCIKXC 419
            C+A R+C++ E       C+  C
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 258 FRLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSS 145
           + L +SLL+ A   + + ++S  D  A E L  ++FSS
Sbjct: 396 YNLRISLLLTASSDTTVKLWSRGDAGAFECLHVFSFSS 433


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 264 WLFRLMVSLLVQALRHSVLDVFSLRDVPAAELLRRW 157
           WL   +V ++V       L +++L  V A ELL RW
Sbjct: 139 WLVSHIVWIVVGTTTFFSLLLYTLNTVSAQELLGRW 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,217
Number of Sequences: 5004
Number of extensions: 32084
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)