Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0978
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              48   6e-08
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    27   0.12 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 48.0 bits (109), Expect = 6e-08
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query: 333 PCLKVHCSAGRVCEINEHGD-AMCNCIKXCPYETDSRRMVCANFNETWQSDCEVYRQRCF 509
           PC   +C  G+ CE++ +   A+C C++ CP      R VCA+  + + + CE++R  C 
Sbjct: 81  PCASKYCGIGKECELSPNSTIAVCVCMRKCPRR---HRPVCASNGKIYANHCELHRAACH 137

Query: 510 ASTTL 524
           + ++L
Sbjct: 138 SGSSL 142


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +3

Query: 363 RVCEINEHGDAMCNCIKXCPYETDSRRMVCANFNETWQSDCEVYRQRCFAST 518
           +VC    H D+ C C+       DS   V  NFNE+     E  R  C  ST
Sbjct: 344 QVCRSRRHSDSCCLCL-------DSMNAVIRNFNES-----ENRRNSCLGST 383


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 199 QPPRCPRGR 173
           QPP+CPR R
Sbjct: 564 QPPQCPRFR 572


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,611
Number of Sequences: 438
Number of extensions: 2145
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)