Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0977
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.0  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    27   2.4  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   5.5  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    25   5.5  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   7.2  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    25   9.5  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   9.5  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   9.5  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 334 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 468
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -2

Query: 486 LYTKGSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTDV-PPQSNS 316
           L+  GS G  F+   RT  LD +        + V++L   ++ + + Y+L  + PP +  
Sbjct: 125 LFMVGSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAK 184

Query: 315 PPGSVLE 295
           PP SV+E
Sbjct: 185 PPASVIE 191


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 451  SPYAY*TSGSSQLLPFCSTRGF 386
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 282 GVLNGDERFPTSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 148
           G +NG    P    C L  +H A +  +  AP+    +SN   KV
Sbjct: 56  GTINGYLTLPQPDGCLLVLQHGAGSSAMSFAPVTQELLSNSDNKV 100


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 507 WHLLLKTLYTKGSIGRAFAVPMRTEH 430
           +H + + L   GSI   FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 107 YATPLMSPYNARLESSSTGSSFPADSP 27
           Y  P+ SPY++    SST SSF   SP
Sbjct: 132 YKKPV-SPYSSSSAVSSTSSSFDRTSP 157


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 268 RRAFPHVTTLHAWNETP 218
           RRA PH+ T+HA   TP
Sbjct: 181 RRAEPHLPTVHANEPTP 197


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 104 ATPLMSPYNARLESSSTGSSFPADSPK 24
           +T    PY A  + ++TGSSF AD  K
Sbjct: 251 STTSSQPYGAFHQPATTGSSFVADKWK 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,612
Number of Sequences: 5004
Number of extensions: 49592
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)