Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0977
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 29 2.4
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 3.2
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 29 3.2
01_06_0456 + 29521282-29522064 28 4.2
06_03_0854 + 25400855-25403741,25406174-25407708 27 7.3
03_06_0069 - 31449319-31450368 27 7.3
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149... 27 7.3
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 27 7.3
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 27 9.7
02_05_0726 - 31252210-31253166,31253667-31253840,31254320-312543... 27 9.7
01_05_0359 + 21350580-21350829,21350990-21351064,21351156-213512... 27 9.7
01_05_0305 + 20659199-20660026,20660147-20660179 27 9.7
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 504 HLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSL--TDVP 331
+L+L LY RA AV + E L Q CP+ ++ LAE+ L +SL + P
Sbjct: 579 NLMLGKLYRISRNNRAAAVCYK-ECLRQ---CPYVFEAITALAEMGLSSKEFSLIFSQAP 634
Query: 330 PQSNSPPGSVLE 295
+ PG L+
Sbjct: 635 NRGGKAPGDSLD 646
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 247 TTLHAWNETPCARRYY 200
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 333 PPQSNSPPGSVLEPDHAGVLNGDERFPTSPLCTLGTKH 220
P +NS P +V +PD +LNGDE T L + +H
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDEIQQTFELNSQEIQH 776
>01_06_0456 + 29521282-29522064
Length = 260
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -1
Query: 313 AWQC--PRTGSRGSFKRRRAFPHVTT 242
AW+C P +G+RG +RRR P TT
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTT 37
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 125 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVV 3
AKR+PT T P AR +++ +F +P P P +V+
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVI 514
>03_06_0069 - 31449319-31450368
Length = 349
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 242 SGDVGKRSSPFKTPA*SGSRTL-PGGEFDWGGTSVKE*RRCPKASSARTE 388
S RSS T S S T P G+ GG + + RCP+ +S+ T+
Sbjct: 31 SSSTSSRSSAQATQQRSSSATSSPHGQGQGGGAAEQAPLRCPRCNSSNTK 80
>02_04_0220 -
21014225-21014386,21014492-21014572,21014739-21014938,
21014999-21015157,21015248-21015377,21015520-21015673,
21015785-21015867,21015981-21016040,21016131-21016217
Length = 371
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 297 RGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWL 422
+GH +T A KNNAG L+ Q Q+ Q GK L
Sbjct: 212 KGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL 252
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 369 ALGHLRYSLTDVPPQSNSPPGSVLEP 292
ALGH+ L + P ++ PP ++P
Sbjct: 494 ALGHIELDLPEAPEKAPKPPAQAVDP 519
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 227 VPSVQSGD--VGKRSSPFKTPA*----SGSRTLPGGEFDWGGTSVKE*RRCPKA 370
VP V + D V + S P+ +P+ SGS P G D GG ++ R CP A
Sbjct: 739 VPRVMNDDNGVAEGSPPWSSPSTRRRLSGSSAKPDGHKDGGGATLPS-RGCPAA 791
>02_05_0726 -
31252210-31253166,31253667-31253840,31254320-31254364,
31254463-31254573,31254669-31254746,31255170-31255234,
31255358-31255733,31256891-31257035,31257308-31257462,
31259036-31259182
Length = 750
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 116 SPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 15
SP Y P ++ N + S +T S P PK P
Sbjct: 159 SPKYVKPAVAKQNGEVVSRATKSDAPVSKPKVDP 192
>01_05_0359 +
21350580-21350829,21350990-21351064,21351156-21351236,
21352633-21352830,21352930-21353019,21353096-21353253,
21353350-21353472,21354989-21355096,21355530-21355826
Length = 459
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 270 GDERFPTSPLCTLGTKHRAPADIIDRAPLPPNR 172
G++ T P GTK R PADI A LPPN+
Sbjct: 9 GEKAVFTIPPELAGTKSRCPADI--PANLPPNQ 39
>01_05_0305 + 20659199-20660026,20660147-20660179
Length = 286
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 277 FKRRRAFPHVTTLHAWNETPCARRYY 200
FKR ++ P V T H W T +++Y+
Sbjct: 261 FKRNKSLPSVNTSHLWILTWNSKKYF 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,552,877
Number of Sequences: 37544
Number of extensions: 380643
Number of successful extensions: 1241
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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