Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0977
(544 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.50
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co... 30 1.1
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 29 1.5
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 29 2.0
At5g62640.1 68418.m07862 proline-rich family protein contains pr... 28 4.6
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo... 28 4.6
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 4.6
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 4.6
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 6.1
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 6.1
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 6.1
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 6.1
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein... 27 8.1
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine... 27 8.1
At3g16260.1 68416.m02051 metallo-beta-lactamase family protein 27 8.1
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.50
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 234 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 88
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
contains Pfam profile: PF00534 Glycosyl transferases
group 1
Length = 981
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -2
Query: 519 VVTFWHLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRY 349
VV F + LL LYT+ G + +P E + +A F P++ V+ + Y
Sbjct: 282 VVVFHNYLLPILYTEFDAGNFYVIPGSPEEVCKAKNLEFPPQKDDVVISIVGSQFLY 338
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -2
Query: 348 SLTDVPPQSNSPPGSVLEPDHAGVLNGDERFPTSPLCTLGTKHRAPADIIDRAPLPPNRV 169
S T PP S +PPG P + ++ TSP ++ K +P P PP
Sbjct: 169 SPTTSPPGSTTPPGGAHSPKSSSAVSP----ATSPPGSMAPKSGSPVSPTTSPPAPPKST 224
Query: 168 S 166
S
Sbjct: 225 S 225
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 373 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 486
LS R W RAK L+Q+ TH+ E T+Y+S ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317
>At5g62640.1 68418.m07862 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 520
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = -2
Query: 336 VPPQSNSPPGSVLEPDHAGVLNGDERFPTSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 157
+PP P S P GD RFP S T + A + P PP SNE+
Sbjct: 237 LPPPPQLPQSSQPPPPGLSGSQGDGRFPESSDFTFDNRMNANITSVPLLP-PPGIPSNES 295
>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase familiy protein
similar to SP|O14072 Cation-transporting ATPase 4 (EC
3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
accession IPR001757: ATPase, E1-E2 type; contains Pfam
profile PF00702: haloacid dehalogenase-like hydrolase
Length = 1179
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 507 WHLLLKTLYTKGSIG-RAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 337
+H+L+ L+T S+ + F + +DQA C P + S E+ H R +TD
Sbjct: 61 FHILV-LLFTTWSVDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 198 DRAPLPPNRVSNETMKVVVFQRRSRET 118
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 249 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 112
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 189 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 79
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 189 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 79
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 116 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 9
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 237 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 142
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
salt-tolerance protein - Arabidopsis thaliana,
PID:e224078
Length = 242
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 426 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSP 313
D+A+ C R V +LA HLR+SLT P ++P
Sbjct: 20 DEAALCNGCDRHVHFANKLAGKHLRFSLTS-PTFKDAP 56
>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
similar to cytidine deaminase (CDD) [Arabidopsis
thaliana] GI:3046700; contains Pfam profile PF00383:
Cytidine and deoxycytidylate deaminase zinc-binding
Length = 293
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 453 AVPMR--TEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVP 331
A PMR H++ S+ F P+ +S L A+ H R ++ P
Sbjct: 2 AQPMRFMLNHIETESYGAFTPQNLSPLINRAIPHTRAQISGSP 44
>At3g16260.1 68416.m02051 metallo-beta-lactamase family protein
Length = 937
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 489 TLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHL 355
+L++KGS+ ++ + D +S PF + VL E+ L HL
Sbjct: 719 SLFSKGSLMQSIYKRPSSPLTDNSSALPFLKKLKKVLGEMGLEHL 763
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,792,718
Number of Sequences: 28952
Number of extensions: 280039
Number of successful extensions: 839
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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