Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0976
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 139 4e-34
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 139 4e-34
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 139 4e-34
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 44 2e-05
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.084
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 28 1.4
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 27 2.4
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 25 7.3
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 25 7.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 7.3
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 25 9.7
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.7
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 25 9.7
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 139 bits (336), Expect = 4e-34
Identities = 63/88 (71%), Positives = 73/88 (82%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+D
Sbjct: 319 RRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKID 378
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNLYLPS 266
RR+GK E +PK +KSGDA I + +PS
Sbjct: 379 RRSGKKIEESPKFVKSGDACIAKM-VPS 405
Score = 70.9 bits (166), Expect = 1e-13
Identities = 31/39 (79%), Positives = 37/39 (94%)
Frame = +2
Query: 248 QLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
++VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 401 KMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 139 bits (336), Expect = 4e-34
Identities = 63/88 (71%), Positives = 73/88 (82%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+D
Sbjct: 319 RRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKID 378
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNLYLPS 266
RR+GK E +PK +KSGDA I + +PS
Sbjct: 379 RRSGKKIEESPKFVKSGDACIAKM-VPS 405
Score = 70.9 bits (166), Expect = 1e-13
Identities = 31/39 (79%), Positives = 37/39 (94%)
Frame = +2
Query: 248 QLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
++VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 401 KMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 139 bits (336), Expect = 4e-34
Identities = 63/88 (71%), Positives = 73/88 (82%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+D
Sbjct: 319 RRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKID 378
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNLYLPS 266
RR+GK E +PK +KSGDA I + +PS
Sbjct: 379 RRSGKKIEESPKFVKSGDACIAKM-VPS 405
Score = 70.9 bits (166), Expect = 1e-13
Identities = 31/39 (79%), Positives = 37/39 (94%)
Frame = +2
Query: 248 QLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
++VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 401 KMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +3
Query: 9 GYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRR 188
GYV +KN P F AQ+ +L P ++ GY+ V+ HTA FA++ K+D+
Sbjct: 544 GYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKT 602
Query: 189 TGKS 200
KS
Sbjct: 603 NRKS 606
Score = 38.7 bits (86), Expect = 7e-04
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 248 QLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 367
+L P+C+E F+++ +GRF +RD TVAVG V+K ++
Sbjct: 622 ELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 31.9 bits (69), Expect = 0.084
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 266 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 358
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 456 FSYNCDTSFTERCFEGKKATNSFLFYIFYKACNVTL 563
F + C + CF +K FLFY F AC V +
Sbjct: 139 FDHYCSFVGKDVCFSNQKFFYQFLFYGFSAACMVLI 174
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 456 FSYNCDTSFTERCFEGKKATNSFLFYIFYKACNVTLFY 569
FS S +E GK A++SF IF K C TL++
Sbjct: 43 FSCTQKPSVSENENVGKYASSSFAERIFCKNCGTTLYF 80
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 570 NLYKVIHNISETFCYDCKLKYKFIE*THLQ 659
N+Y++I +E Y C+L Y E +Q
Sbjct: 245 NIYQIIEGAAENAKYICRLAYGLFEAPEIQ 274
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 244 MAASPDLMDFGLTSVDLPVRRSTFS 170
++ +PDL D L+SVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Frame = +3
Query: 453 NFSYNCDTSFTERCFEGKKATN------SFLFYIFYKACNVTLFYNLYKVIHNISETFCY 614
NFS NC T + C KK T SF YK ++ F L ++ ++ Y
Sbjct: 795 NFS-NCFTYWIINCILEKKNTKARTAVISFFIQTAYKCLSLQNFSTLMSIVSALNSAPIY 853
Query: 615 DCKLKYKFIE 644
YK ++
Sbjct: 854 RLHAAYKLVK 863
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 210 NPKSIKSGDAAIVNLYLPSLYV*SPSRNSHPSVV 311
+P+ IKS +++ S+YV SP + + P +V
Sbjct: 172 SPEIIKSATVQDAEIHISSIYVISPIKKNLPFLV 205
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 423 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTA 313
P + ++ T+PP S+ T + PT ++ + TA
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 396 VTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 274
+ L P +S + TP+AT S+ + P GG D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,967
Number of Sequences: 5004
Number of extensions: 53033
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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