Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0976
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 124 6e-29
03_01_0547 + 4093196-4093657,4094267-4095148 124 6e-29
03_01_0544 + 4082528-4082989,4083585-4084466 124 6e-29
03_01_0543 + 4076981-4077442,4078145-4079026 124 6e-29
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 34 0.12
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 33 0.15
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 32 0.35
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 32 0.35
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 4.3
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 124 bits (299), Expect = 6e-29
Identities = 53/84 (63%), Positives = 68/84 (80%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+D
Sbjct: 309 KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKID 368
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNL 254
RR+GK E PK +K+GDA +V +
Sbjct: 369 RRSGKELEKEPKFLKNGDAGMVKM 392
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/52 (59%), Positives = 40/52 (76%)
Frame = +2
Query: 209 QPKIHQVWRCSHCQLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
+PK + +++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 124 bits (299), Expect = 6e-29
Identities = 53/84 (63%), Positives = 68/84 (80%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+D
Sbjct: 309 KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKID 368
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNL 254
RR+GK E PK +K+GDA +V +
Sbjct: 369 RRSGKELEKEPKFLKNGDAGMVKM 392
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/52 (59%), Positives = 40/52 (76%)
Frame = +2
Query: 209 QPKIHQVWRCSHCQLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
+PK + +++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 124 bits (299), Expect = 6e-29
Identities = 53/84 (63%), Positives = 68/84 (80%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+D
Sbjct: 309 KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKID 368
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNL 254
RR+GK E PK +K+GDA +V +
Sbjct: 369 RRSGKELEKEPKFLKNGDAGMVKM 392
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/52 (59%), Positives = 40/52 (76%)
Frame = +2
Query: 209 QPKIHQVWRCSHCQLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
+PK + +++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 124 bits (299), Expect = 6e-29
Identities = 53/84 (63%), Positives = 68/84 (80%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+D
Sbjct: 309 KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKID 368
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNL 254
RR+GK E PK +K+GDA +V +
Sbjct: 369 RRSGKELEKEPKFLKNGDAGMVKM 392
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/52 (59%), Positives = 40/52 (76%)
Frame = +2
Query: 209 QPKIHQVWRCSHCQLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
+PK + +++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 263 KPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
K +CVE F LGR +R T+AVG++ V
Sbjct: 617 KEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 245 CQLVPSKPLCVESFQEFPPLGRFAVR 322
C++ + +C+E+F +FP LGRF +R
Sbjct: 390 CRIQVNNLICIENFSDFPQLGRFTLR 415
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 248 QLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 355
Q+ P+CV+ F + LGR +R T+AVGV+
Sbjct: 636 QVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 248 QLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 355
Q+ P+CV+ F + LGR +R T+AVGV+
Sbjct: 636 QVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 81 LNHPGQISNGYTPVLDCHTAHIACKFAEIKE-KVDRRTGKSTEVNPKSI 224
L+ P +ISNG TPV D ++ C+ K D + + +EV+ S+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVDKDSV 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,667,903
Number of Sequences: 37544
Number of extensions: 352297
Number of successful extensions: 978
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -