Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0976
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 132 2e-31
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 38 0.007
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 30 1.5
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 3.4
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 29 3.4
SB_50302| Best HMM Match : DUF963 (HMM E-Value=0.96) 29 4.4
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 4.4
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006) 29 4.4
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 5.9
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09) 28 5.9
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 132 bits (320), Expect = 2e-31
Identities = 60/88 (68%), Positives = 72/88 (81%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
+RG VAGD KNNPPK FTAQVIV+NHPG+I GY+PVLDCHTAHIACKF ++ EK+D
Sbjct: 180 KRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKID 239
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNLYLPS 266
RR+GK E NPK IK+GDAA+V + +PS
Sbjct: 240 RRSGKKLEDNPKMIKTGDAAMVEM-IPS 266
Score = 76.6 bits (180), Expect = 2e-14
Identities = 33/52 (63%), Positives = 44/52 (84%)
Frame = +2
Query: 212 PKIHQVWRCSHCQLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 367
PK+ + + +++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 250 PKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVD 301
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 248 QLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 355
+L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 43 ELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -3
Query: 229 DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQSK 122
DL +F G+T++ LP ST + NLQ W +WQSK
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQSK 2494
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +3
Query: 441 C*QHNFSYNCDTSFTERCFEGKKATNSFLFYIFYKACNVTLFYNL-YKVIHNISETFCYD 617
C N + D + C K+ + Y KAC L Y+ + H E +C++
Sbjct: 250 CGSCNRIFAGDECYERHCVPNKEGNSICSKYYRCKACKKVLAYSKRHPRDHKCGEVYCFN 309
Query: 618 CKLKYKFIE*THLQ 659
CK ++ H+Q
Sbjct: 310 CKDFFRAGHLCHMQ 323
>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
Length = 495
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 366 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 268
LT+L PT L RT +PR G W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 269 LCVESFQEFPPLGRFAVRD 325
+C+E F +F +GRF +RD
Sbjct: 527 ICIEKFSDFQQMGRFTLRD 545
>SB_50302| Best HMM Match : DUF963 (HMM E-Value=0.96)
Length = 427
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 226 SLEMQPLSTCTFQASMCRV--LPGIPTPRSFCCP*HEADSCCRSH 354
SL P +C FQA ++ PRS P HE CCRSH
Sbjct: 375 SLRGFPYISCYFQAKYLKIGAWSARHIPRS--APAHEVFECCRSH 417
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 251 LVPSKPLCVESFQEFPPLGRFAVRDMRQ 334
+VP++P CV SF EF + +RD+ Q
Sbjct: 382 VVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
Length = 1382
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 214 QNPSSLEMQPLSTCTFQASMCRVLPGIPTPRS 309
Q L ++ +F++SM +VLP PTPR+
Sbjct: 710 QEEERLRLEQQRVTSFESSMHKVLPSPPTPRN 741
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 351 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 256
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
Length = 666
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 329 SCHGQQNDRGVGIPGRTLHIEAWKVQVDNGCISRLDGFWVDFSRFTSTTVN 177
S GQQND + + ++ Q+D CI RL ++ R ST +N
Sbjct: 476 SRRGQQNDEFAELSHQLPLPKSISSQLDRLCIMRLTNSYIKIKRLLSTMMN 526
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,436,077
Number of Sequences: 59808
Number of extensions: 410889
Number of successful extensions: 1099
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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