Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0976
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 133 9e-32
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 133 9e-32
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 133 9e-32
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 39 0.003
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 31 0.72
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 2.9
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 5.1
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 5.1
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 5.1
Z82274-8|CAB05230.3| 467|Caenorhabditis elegans Hypothetical pr... 27 8.9
AF040646-3|AAK31541.1| 946|Caenorhabditis elegans Hypothetical ... 27 8.9
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 133 bits (322), Expect = 9e-32
Identities = 62/84 (73%), Positives = 67/84 (79%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVD
Sbjct: 287 RRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVD 346
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNL 254
RRTGK E PK +KSGDA IV L
Sbjct: 347 RRTGKKVEDFPKFLKSGDAGIVEL 370
Score = 71.3 bits (167), Expect = 6e-13
Identities = 31/39 (79%), Positives = 37/39 (94%)
Frame = +2
Query: 248 QLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
+L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 369 ELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 133 bits (322), Expect = 9e-32
Identities = 62/84 (73%), Positives = 67/84 (79%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVD
Sbjct: 321 RRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVD 380
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNL 254
RRTGK E PK +KSGDA IV L
Sbjct: 381 RRTGKKVEDFPKFLKSGDAGIVEL 404
Score = 71.3 bits (167), Expect = 6e-13
Identities = 31/39 (79%), Positives = 37/39 (94%)
Frame = +2
Query: 248 QLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
+L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 403 ELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 133 bits (322), Expect = 9e-32
Identities = 62/84 (73%), Positives = 67/84 (79%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVD
Sbjct: 321 RRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVD 380
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNL 254
RRTGK E PK +KSGDA IV L
Sbjct: 381 RRTGKKVEDFPKFLKSGDAGIVEL 404
Score = 71.3 bits (167), Expect = 6e-13
Identities = 31/39 (79%), Positives = 37/39 (94%)
Frame = +2
Query: 248 QLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
+L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 403 ELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +2
Query: 248 QLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 364
+L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 492 RLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +3
Query: 60 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 239
F A+V+VL H I++GY+ VL +A + +D++TG+ K +K +
Sbjct: 431 FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEK 488
Query: 240 AIVNLYLPSLYV*SP 284
I+ L P +V P
Sbjct: 489 CIMRLESPEPFVLEP 503
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 453 NFSYNCDTSFTERCFEGKKATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 611
NF+ D+S GK+ NS++F I+ C + F Y++ + +C
Sbjct: 249 NFAVGLDSSI----LIGKRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 480 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 325
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -1
Query: 426 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 274
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 123 LDCHTAHIACKFAEIKEKVDRRTGKSTE 206
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 123 LDCHTAHIACKFAEIKEKVDRRTGKSTE 206
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 123 LDCHTAHIACKFAEIKEKVDRRTGKSTE 206
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>Z82274-8|CAB05230.3| 467|Caenorhabditis elegans Hypothetical
protein JC8.2 protein.
Length = 467
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 230 WRCSHCQLVPSKPLCVESFQEFP 298
W C H ++ + PLC+E Q P
Sbjct: 164 WYCHHDYILDAPPLCIEPVQHDP 186
>AF040646-3|AAK31541.1| 946|Caenorhabditis elegans Hypothetical
protein H17B01.4a protein.
Length = 946
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 445 NSTIFHTTAILHSPKGVSKEKRLQTHSFSIFFTRLV 552
N T+ I SP G+ + + +FFTRLV
Sbjct: 866 NQTVHRVRGIKTSPSGLESTSLVLAYGTDLFFTRLV 901
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,169
Number of Sequences: 27780
Number of extensions: 312112
Number of successful extensions: 842
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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