Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0976
(660 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 127 6e-30
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 127 6e-30
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 127 6e-30
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 127 6e-30
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 85 5e-17
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 42 5e-04
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 33 0.22
At5g51750.1 68418.m06417 subtilase family protein similar to sub... 32 0.29
At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /... 29 2.7
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 4.8
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot... 27 8.4
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 127 bits (307), Expect = 6e-30
Identities = 54/84 (64%), Positives = 70/84 (83%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+D
Sbjct: 309 KRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKID 368
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNL 254
RR+GK E PK +K+GDA +V +
Sbjct: 369 RRSGKEIEKEPKFLKNGDAGMVKM 392
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +2
Query: 209 QPKIHQVWRCSHCQLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 367
+PK + ++ P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (307), Expect = 6e-30
Identities = 54/84 (64%), Positives = 70/84 (83%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+D
Sbjct: 309 KRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKID 368
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNL 254
RR+GK E PK +K+GDA +V +
Sbjct: 369 RRSGKEIEKEPKFLKNGDAGMVKM 392
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +2
Query: 209 QPKIHQVWRCSHCQLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 367
+PK + ++ P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (307), Expect = 6e-30
Identities = 54/84 (64%), Positives = 70/84 (83%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+D
Sbjct: 309 KRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKID 368
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNL 254
RR+GK E PK +K+GDA +V +
Sbjct: 369 RRSGKEIEKEPKFLKNGDAGMVKM 392
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +2
Query: 209 QPKIHQVWRCSHCQLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 367
+PK + ++ P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (307), Expect = 6e-30
Identities = 54/84 (64%), Positives = 70/84 (83%)
Frame = +3
Query: 3 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 182
+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+D
Sbjct: 309 KRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKID 368
Query: 183 RRTGKSTEVNPKSIKSGDAAIVNL 254
RR+GK E PK +K+GDA +V +
Sbjct: 369 RRSGKEIEKEPKFLKNGDAGMVKM 392
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +2
Query: 209 QPKIHQVWRCSHCQLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 367
+PK + ++ P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 84.6 bits (200), Expect = 5e-17
Identities = 36/58 (62%), Positives = 45/58 (77%)
Frame = +3
Query: 81 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNL 254
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINM 58
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = +2
Query: 209 QPKIHQVWRCSHCQLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
+PK + + + P+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 44 EPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 41.5 bits (93), Expect = 5e-04
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 245 CQLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 355
C++ + +C+E F +FP LGRF +R +T+AVG +
Sbjct: 486 CRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 36 NPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 209
NP +F AQ+ +L + GY +L H C+ E+K ++D +T K +
Sbjct: 414 NPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRKPMKK 473
Query: 210 NPKSIKSGDAAIVNL 254
+K+G A + +
Sbjct: 474 KVLFVKNGAAVVCRI 488
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 266 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 364
P+CVE+F E LGR +R +TVA+G + +
Sbjct: 631 PVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At5g51750.1 68418.m06417 subtilase family protein similar to
subtilisin-like protease GI:3687307 from [Lycopersicon
esculentum]
Length = 780
Score = 32.3 bits (70), Expect = 0.29
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = -1
Query: 480 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSR-TAKRP 304
M R + N + SSY + + F A VT+ P + + TV +R KRP
Sbjct: 695 MTLRRTVTNVGPHISSYKVSVSPFKGASVTVQPKTLNFTSKHQKLSYTVTFRTRFRMKRP 754
Query: 303 R-GGNSWKDSTHRGLEGTS*QWL 238
GG WK +TH+ WL
Sbjct: 755 EFGGLVWKSTTHKVRSPVIITWL 777
>At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Salix gilgiana] GI:6714524; contains
PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 414
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = -2
Query: 215 WVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWV 36
W + +S++VN +F+ VGS+ C V +LT VK + K S W+
Sbjct: 58 WDKACKSSSSSVNLIIPRGEFS--VGSLRFSGPCTNVSNLTVRVKASTDLSKYRSGGGWI 115
Query: 35 VFGVTSNITTT 3
FG + +T T
Sbjct: 116 QFGWINGLTLT 126
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 153 KFAEIKEKVDRRTGKSTEVNPKSI 224
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor [Homo
sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1706
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 317 QQNDRGVGIPGRTLHIEAWKVQVDNG 240
+ ND + + G+TL +E KV +DNG
Sbjct: 314 ENNDDQIMVRGKTLSLELLKVIIDNG 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,766
Number of Sequences: 28952
Number of extensions: 284664
Number of successful extensions: 770
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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