Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0975
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   1.2  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   2.9  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   3.8  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   5.0  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   5.0  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   6.7  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    24   8.8  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 69  RPAQRGQKPRVEHLDQASFCP 7
           RP +R +KPR+ HLD AS  P
Sbjct: 613 RP-KRSEKPRIYHLDVASMYP 632


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 92  DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 241
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 228 RYY-RPRTASPNRVSNETMRVVVFQRRSRETISH 326
           RY+ RP  +S N   +  +++ VF+  +  T+SH
Sbjct: 169 RYFPRPHRSSKNLSVSNRLQLAVFKETTSSTLSH 202


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 120 PPGSVLEPDHAGVLNGDERFRHVTTLHAWNE 212
           P   ++E D A          H+T LH WNE
Sbjct: 876 PKDKIMEADKARANFTQPGGDHLTLLHIWNE 906


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 175 VSATSPLCTLGTKHRAPADIIDRAPLPPTE 264
           ++   P  +   + R+  D + R PLPP E
Sbjct: 164 ITVAEPRRSFAREERSTGDWVRRGPLPPAE 193


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 230 ILSTAHRFPQPSK**NNESSGFSATIARDDLPL 328
           + S+AH   QP K       G+S+T+A DD  L
Sbjct: 79  VTSSAHCSTQPHKDEAYSHHGYSSTMALDDSSL 111


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 310 ARRSPTYATPLMSPYNARL 366
           +R++PTY  P+  PY  +L
Sbjct: 331 SRKTPTYVPPIARPYFRQL 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,368
Number of Sequences: 5004
Number of extensions: 31851
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)