Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0975
(371 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical pr... 30 0.61
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p... 28 2.4
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p... 28 2.4
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 28 2.4
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 27 4.3
AC084197-5|AAO38574.1| 335|Caenorhabditis elegans Serpentine re... 27 5.7
Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical p... 26 7.5
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z50045-2|CAA90363.2| 485|Caenorhabditis elegans Hypothetical pr... 26 7.5
U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein. 26 7.5
U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth... 26 7.5
AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopente... 26 7.5
AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical ... 26 7.5
AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical ... 26 7.5
AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical ... 26 7.5
AL021488-1|CAB63369.1| 502|Caenorhabditis elegans Hypothetical ... 26 7.5
AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocar... 26 7.5
Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical pr... 26 9.9
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 26 9.9
>Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical
protein F19B6.4 protein.
Length = 695
Score = 29.9 bits (64), Expect = 0.61
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 93 TDVPPQSNSPP-GSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASPNRVS 269
T +P N P S +E + + ERFR TL N+T AR + +T + V
Sbjct: 42 TPIPVLINDTPVASEIEQVEKELAHSSERFRKPKTLSVTNDTESARIPSQVKTNAKKLVF 101
Query: 270 NETMRVVVFQRRSRETI 320
VV+ ++ R+ I
Sbjct: 102 QNIQAVVLKKKGVRQEI 118
>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 21 LDPDVPREVSVLAELALGHLRYSLTDVPPQS 113
+DP EV +LA ALGH R + +P S
Sbjct: 1055 VDPSEDYEVGILAANALGHSRLMYSAIPKDS 1085
>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical
protein T04A11.3 protein.
Length = 1014
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 21 LDPDVPREVSVLAELALGHLRYSLTDVPPQS 113
+DP EV +LA ALGH R + +P S
Sbjct: 861 VDPSEDYEVGILAANALGHSRLMYSAIPKDS 891
>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 21 LDPDVPREVSVLAELALGHLRYSLTDVPPQS 113
+DP EV +LA ALGH R + +P S
Sbjct: 1055 VDPSEDYEVGILAANALGHSRLMYSAIPKDS 1085
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 27.9 bits (59), Expect = 2.4
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 96 DVPPQS-NSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASPNRVSN 272
DVP + PP +L+P + +E+ H L E P + P+ A+P V
Sbjct: 564 DVPDAAPEDPPKVILKPTPPHRMTQEEKNAHFARLTTDKEKPTSSTSILPQDAAPPHVPP 623
Query: 273 ETMRVVVFQRRSRETIS 323
+V+ ET++
Sbjct: 624 PPPPLVLRPHHQDETLA 640
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 96 DVPPQS-NSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASPNRV 266
DVP + PP +L+P + +E+ H L E P + P+ A+P V
Sbjct: 569 DVPDAAPEDPPKGILKPTPPHRMTQEEKNAHFARLTTDKEKPTSSASILPQDAAPPHV 626
>AC084197-5|AAO38574.1| 335|Caenorhabditis elegans Serpentine
receptor, class v protein26 protein.
Length = 335
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 240 PRTASPNRVSNETMRVVV 293
P TA P+R+SNE R V+
Sbjct: 317 PTTARPSRISNENRRTVI 334
>Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 360 GIVRRHERCRISGRSSRAIVAEKPL-LSLFHYLL 262
G++RRH C+I GR + + E PL LS +++
Sbjct: 450 GLIRRHSHCKI-GRYHQHLHEELPLDLSALEFMM 482
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 134 PRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHR 250
PR +R S RRR PP R +R R P+ R
Sbjct: 227 PRRDTRRSPPRRRGSPPARGGDRRDRREDRRPVRDEKER 265
>Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical
protein C41G7.5b protein.
Length = 560
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 75 HLRYSLTDVPPQSNSPPGSVLEPD 146
H Y LT PP PPG+V PD
Sbjct: 461 HDVYHLTQYPPTYPHPPGTVGYPD 484
>Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical
protein C41G7.5a protein.
Length = 602
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 75 HLRYSLTDVPPQSNSPPGSVLEPD 146
H Y LT PP PPG+V PD
Sbjct: 503 HDVYHLTQYPPTYPHPPGTVGYPD 526
>Z50045-2|CAA90363.2| 485|Caenorhabditis elegans Hypothetical
protein F38B2.3 protein.
Length = 485
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 294 FQRRSRETISHLCDTSHV 347
F R ET +HLCD +HV
Sbjct: 117 FDRLINETSNHLCDRTHV 134
>U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein.
Length = 535
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 360 GIVRRHERCRISGRSSRAIVAEKPL-LSLFHYLL 262
G++RRH C+I GR + + E PL LS +++
Sbjct: 449 GLIRRHSHCKI-GRYHQHLHEELPLDLSALEFMM 481
>U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth
rate protein 1 protein.
Length = 430
Score = 26.2 bits (55), Expect = 7.5
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +3
Query: 69 LGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRH---VTTLHAWNETPCARRYYR 239
+ H +Y + P L+P LNGD+ F+ LH RR+YR
Sbjct: 268 INHSKYGVMQCIGLKEFVPWLNLDPSERDTLNGDKLFKQGCDDVKLHTRQYARRQRRWYR 327
Query: 240 PR 245
R
Sbjct: 328 SR 329
>AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopentenyl
transferase protein.
Length = 430
Score = 26.2 bits (55), Expect = 7.5
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +3
Query: 69 LGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRH---VTTLHAWNETPCARRYYR 239
+ H +Y + P L+P LNGD+ F+ LH RR+YR
Sbjct: 268 INHSKYGVMQCIGLKEFVPWLNLDPSERDTLNGDKLFKQGCDDVKLHTRQYARRQRRWYR 327
Query: 240 PR 245
R
Sbjct: 328 SR 329
>AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 360 GIVRRHERCRISGRSSRAIVAEKPL-LSLFHYLL 262
G++RRH C+I GR + + E PL LS +++
Sbjct: 450 GLIRRHSHCKI-GRYHQHLHEELPLDLSALEFMM 482
>AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical
protein Y55D9A.2b protein.
Length = 511
Score = 26.2 bits (55), Expect = 7.5
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +3
Query: 108 QSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASPNRVSNETMRV 287
QS PPG VL P++ ++ + H H P ++YRP + +++ E
Sbjct: 17 QSRIPPGYVLYPNY------EQYWSHE---HGMFYNPDTEQFYRPEDKTVYQLNAEGSEY 67
Query: 288 VVFQRR 305
V+ +RR
Sbjct: 68 VLVERR 73
>AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical
protein Y55D9A.2a protein.
Length = 502
Score = 26.2 bits (55), Expect = 7.5
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +3
Query: 108 QSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASPNRVSNETMRV 287
QS PPG VL P++ ++ + H H P ++YRP + +++ E
Sbjct: 17 QSRIPPGYVLYPNY------EQYWSHE---HGMFYNPDTEQFYRPEDKTVYQLNAEGSEY 67
Query: 288 VVFQRR 305
V+ +RR
Sbjct: 68 VLVERR 73
>AL021488-1|CAB63369.1| 502|Caenorhabditis elegans Hypothetical
protein Y45F10A.2 protein.
Length = 502
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 95 RCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVR 223
R ++P AW R G G F + R P AR + VR
Sbjct: 53 RSSSPTPQSAWAPNRQGFGGQFSKWRTSTPMTTPARYPQQAVR 95
>AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocarbon
receptor orthologAHR-1 protein.
Length = 602
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 75 HLRYSLTDVPPQSNSPPGSVLEPD 146
H Y LT PP PPG+V PD
Sbjct: 503 HDVYHLTQYPPTYPHPPGTVGYPD 526
>Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical
protein F34H10.4 protein.
Length = 452
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 167 RRAFPPRHHSARLERNTVRPPILS-TAHRFPQPS 265
RR FPP H+ +L+R+ PP+ A P PS
Sbjct: 185 RRQFPPPHYLEQLQRD--HPPLFHLNAFDSPPPS 216
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 116 LPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTA 244
LP+ +T S + +R++ P H +A + + +PP TA
Sbjct: 229 LPSSSASKTSSSPAGLKRKSAPSEHPNAPIRKKPQQPPKPQTA 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,136,945
Number of Sequences: 27780
Number of extensions: 194609
Number of successful extensions: 558
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -