Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0975
         (371 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   1.3  
At3g62370.1 68416.m07006 expressed protein                             28   2.3  
At1g72710.1 68414.m08408 casein kinase, putative similar to case...    28   2.3  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   4.0  
At5g60880.1 68418.m07637 expressed protein  ; expression support...    26   7.0  
At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein ...    26   9.2  
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina...    26   9.2  

>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 99  VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 215
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 114 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 209
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158
          Length = 465

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 179 PPRHHSARLERNTVRPPILSTAHRFPQPSK**NNESSGFSATIAR 313
           PPRHH   +  ++  PP +++A R   PS       SG+S+ I R
Sbjct: 303 PPRHHGPVVGPSSALPPAITSAER---PSGGDEARPSGWSSGIPR 344


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 199  TLGTKHRAPADIIDRAPLP 255
            T+G+ HR+ AD ++ +PLP
Sbjct: 972  TIGSDHRSNADSVEHSPLP 990


>At5g60880.1 68418.m07637 expressed protein  ; expression supported
           by MPSS
          Length = 262

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +2

Query: 140 TGSRGSFKRRRAFPP--RHHSARLERNTVRPPILSTAHR---FPQPSK**NNESSGF 295
           T  + S ++    PP  RHH   L  ++V P    + HR   +PQP     +E SGF
Sbjct: 60  TKKKRSERKLSLSPPGTRHHHLHLRSSSVSPTTSGSQHRRLSWPQPPV---SEESGF 113


>At3g17770.1 68416.m02267 dihydroxyacetone kinase family protein
           contains Pfam domains, PF02733: DAK1 domain and PF02734:
           DAK2 domain
          Length = 595

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +2

Query: 92  DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILS 238
           DR  AP K P W     G+R   K     PP      +E  + RP  LS
Sbjct: 330 DRLDAPTKAPNWPVGTDGNRPPAKIPVPVPPSRSIKSMESQS-RPLELS 377


>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
           family protein low similarity to phosphatidylinositol
           3,5-kinase [Candida albicans] GI:14571648; contains Pfam
           profile PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase
          Length = 1648

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 96  DVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNE 212
           D  P    PP S +E + +  LNGD     VT  ++ N+
Sbjct: 670 DFDPTQIFPPSSEVETEQSDTLNGDFANNLVTRSYSSNQ 708


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,785,065
Number of Sequences: 28952
Number of extensions: 187637
Number of successful extensions: 488
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)