Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0972
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 0.99
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.3
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 4.0
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 4.0
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 5.3
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 5.3
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 5.3
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 24 7.0
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 24 7.0
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 24 7.0
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 24 7.0
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 24 9.3
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 24 9.3
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 24 9.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 9.3
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 24 9.3
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 24 9.3
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 24 9.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 24 9.3
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch... 24 9.3
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 0.99
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 158 PWNPIEGRYGSEREEHRICGGVRILSADLENSVRDVRGDVAP 283
P+ P+EG Y + ++ HRI R A LE +R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 2.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -2
Query: 210 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 73
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 4.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 69 RVFDGVTQSGLKTPPRGPGRV 131
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 4.0
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +2
Query: 5 PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 163
PV + G TV+ P+S+ + +P+ P A+ + CL + W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 4.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 69 RVFDGVTQSGLKTPPRGPGRV 131
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 5.3
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 PVPI-PEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERS 121
P+PI P+ ++ P+S TS R P P+D S
Sbjct: 338 PIPILPKMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPS 377
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 5.3
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 239 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 96
P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 617 PLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 5.3
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 174 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 73
++ GTR L+ K PD+ ++ G + L T
Sbjct: 8 NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSAST 41
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 129 LFPDLSAASSGHFGLPRRT 73
LFP +S + G F +PRRT
Sbjct: 386 LFPSVSVENFGCFQVPRRT 404
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 24.2 bits (50), Expect = 7.0
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = -2
Query: 276 TSPRTSLTEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPD--LSAAS 103
T S TE+ + S +TP + + S G+ ++ Q R +FP+ L
Sbjct: 376 TEENDSTTEYVNTESSSKTPAPHKHTFNSCYQKKDYGYIPEVSVEQNRHIFPEWMLPDKR 435
Query: 102 SGHFGLPR 79
S +G P+
Sbjct: 436 SHSYGSPK 443
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.2 bits (50), Expect = 7.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -3
Query: 215 RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLK 60
+K + +P HI LL + E + + +++ + SRRR L EH LK
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL---YEHIVLK 1085
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +1
Query: 220 CPDTLCGP*KFSEGCTWRCRAGSYPY 297
CP C F +G +WRC + Y
Sbjct: 477 CPAADCNKKVFDQGGSWRCEKCNKEY 502
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 110 RRLQATLGYPVEHSFLKTRERLLKR 36
RR+ +T+G PV+H E L+R
Sbjct: 87 RRVASTIGIPVDHRRRNRSEESLQR 111
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 23.8 bits (49), Expect = 9.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 153 EFHGIL*KGDMVRNAKST 206
E+HG+ +G +VRNA ++
Sbjct: 69 EYHGVQARGQLVRNADNS 86
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 23.8 bits (49), Expect = 9.3
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 152 ERSGRKENSSRTSRRR---LQATLGYPVEHSFLKTRERLLKRFRCRVPE*EPD 3
+R +E + RR+ L+ Y KT+++ LKR R + E PD
Sbjct: 10 QRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPD 62
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect = 9.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 5 PVPIPEPGSGTVS 43
P PIP P +GTVS
Sbjct: 253 PPPIPPPSNGTVS 265
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 141 QKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLPGS 19
Q +K FPD ++ SG + +F+D ++ P GS
Sbjct: 383 QIQKRFPDATSPFSGESMFREYSSIFEDYHQLLVNFPSEGS 423
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 23.8 bits (49), Expect = 9.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 11 PIPEPGSGTVSIIVPSSLKTSVRRGNPKWPE 103
P P +V++I+ + K S NPKWP+
Sbjct: 23 PNAPPRRASVAVII--AFKESQDFSNPKWPQ 51
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 119 SGKSFLFCLSVRVPWNPIEGRYGSERE 199
+G LFCLS+ WN +Y R+
Sbjct: 478 AGSLQLFCLSIIKRWNQTGQKYSDLRD 504
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 23.8 bits (49), Expect = 9.3
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = -2
Query: 234 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDE 55
ESI P+ E ++ F GTR L+ + F L +G + RT +
Sbjct: 317 ESIELRPEEAVIDVDELDKNAVLFGGTRVLQVTQSPFCKLKTPDNGVPAIVLRTGFETSQ 376
Query: 54 GTIIETV 34
G+++ T+
Sbjct: 377 GSLVRTM 383
>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 72 LVFKDEGTIIETVPLPGSGIGTG 4
L D + V PGSG+GTG
Sbjct: 197 LKIHDTSMVNANVSTPGSGVGTG 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,667,525
Number of Sequences: 5004
Number of extensions: 33111
Number of successful extensions: 105
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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