Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0972
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0350 + 2534422-2535615 31 0.41
12_02_0407 - 18654134-18654172,18654913-18655803 30 0.71
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 1.2
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 28 2.2
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 27 3.8
06_01_1013 - 7931756-7935109 27 5.0
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 27 6.6
05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664 27 6.6
02_02_0590 - 11894721-11895188,11895684-11895851 27 6.6
12_02_1038 - 25596027-25596393,25596492-25596660,25597283-255973... 26 8.7
11_05_0087 + 18970741-18972702 26 8.7
09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149 26 8.7
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 26 8.7
04_04_0564 - 26261199-26261508,26261605-26261697,26262150-262622... 26 8.7
03_01_0563 + 4169144-4169516,4170362-4170648,4171339-4171576,417... 26 8.7
01_06_0456 + 29521282-29522064 26 8.7
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.41
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 163 PWNSNAQAEKKTLPGPLGGVFRP 95
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 0.71
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 20 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 184
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.1 bits (62), Expect = 1.2
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -2
Query: 261 SLTEFSRSA--ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 88
S E SR++ + I+ P M S + + GFHG L+ KL PDL + HF
Sbjct: 175 SKQESSRASPMKLIKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFN 231
Query: 87 LPRRTLVFKDEGTI 46
LVF G I
Sbjct: 232 PATNQLVFPGRGAI 245
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 324 ALHLGDLLRIWVRTGATSPRTSLTEFSRSAESIRTPPQMRCSSRSEP 184
A H G I VRT + TS + A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 284 PARHLHVHPSLNFQGPQRVSGHRRKCGALRVPNHISLL*DSMELER 147
P+ H +H S P+R RR+CGAL + + D + + R
Sbjct: 18 PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVTVRR 63
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 293 GYEPARHLHVHPSLNFQGPQRVSGHR 216
G+EP R + +HP+ + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 26.6 bits (56), Expect = 6.6
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 163 PWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*RRGNDY*N-GSAAGFRNRNR 5
P + A+ +++T P G + W+TPSN R R G + G + G R+R+R
Sbjct: 1578 PRYTPAKTKQETEPMGTGFDRQETWLTPSNGRGGRGGRGRGSRGGSRGGRSRSR 1631
>05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664
Length = 248
Score = 26.6 bits (56), Expect = 6.6
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 23 PGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRYGS-ERE 199
PGSG V +IVP V G W R + F F + +E +GS E E
Sbjct: 21 PGSGGVQVIVPGG--GGVHPGG-DWRRTTKSRRNR-FRFSARPEIKVAALEEEHGSGEEE 76
Query: 200 EH 205
EH
Sbjct: 77 EH 78
>02_02_0590 - 11894721-11895188,11895684-11895851
Length = 211
Score = 26.6 bits (56), Expect = 6.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 47 IVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCL 145
++ S + V GN P +E+ G ++L CL
Sbjct: 70 VIQSPINLQVEHGNDLTPTSVSEKPGNNYLPCL 102
>12_02_1038 -
25596027-25596393,25596492-25596660,25597283-25597349,
25597617-25597794,25599157-25599228,25599311-25599717,
25600035-25600740,25600829-25600998,25601963-25602022,
25602385-25602435
Length = 748
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 285 TGATSPRTSLTEFSRSAESIRTPPQMRCSSRSEPYLPSIGFH 160
T +T+PR ++ + +++RTPP C+ LP IG H
Sbjct: 364 TNSTTPRRKISSSDNNLKTLRTPP---CA------LPGIGLH 396
>11_05_0087 + 18970741-18972702
Length = 653
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 149 VRVPWNPIEGRYGSEREEHR 208
VR P P+ GR+G RE R
Sbjct: 56 VRAPRRPLHGRHGHHREHRR 75
>09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149
Length = 331
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 373 GSNLPTXLTYITLSTRCSSPW 311
G++ P +T + STRC+ PW
Sbjct: 296 GAHEPETMTASSASTRCTQPW 316
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 288 RTGATSPRTSLTEFSRSAESIRTPPQMRCSSRSEPY 181
+ G S + +FS+S+ S +PP S+R +P+
Sbjct: 27 KKGKRSTLKKILQFSKSSASTSSPPVTSPSARQQPH 62
>04_04_0564 -
26261199-26261508,26261605-26261697,26262150-26262295,
26262400-26262720,26263184-26263272,26263466-26263654,
26265546-26265804
Length = 468
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 315 LGDLLRIWVRTGATSPRTSLTEFSRSAESIRTPPQM 208
+G LRIWV +G T R +T S +++ P++
Sbjct: 356 MGAGLRIWVYSGDTDGRVPVTSTRYSLNTMKLRPRL 391
>03_01_0563 +
4169144-4169516,4170362-4170648,4171339-4171576,
4172473-4172796,4172914-4172999,4173124-4173231,
4173315-4173619,4173733-4173960,4174109-4174877
Length = 905
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 234 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 136
+S R P R ++PYLPS G R LR+K
Sbjct: 205 QSTRELPTKRVFFSNKPYLPSETPPGLRELREK 237
>01_06_0456 + 29521282-29522064
Length = 260
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 150 TLRQKRKLFPDLSAASSGHFGLPRRTL 70
TLR+ ++FP +S++ G FG+ R L
Sbjct: 171 TLRRHHQVFPHISSSCQGCFGVRRYIL 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,627,471
Number of Sequences: 37544
Number of extensions: 253129
Number of successful extensions: 850
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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