Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0972
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   2.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   4.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   8.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   8.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   8.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   8.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 123 PDLSAASSGHFGLPRRTLVFK 61
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 192 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 109
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = -2

Query: 303 LRIWVRTGATSPRTSLTEFSRSAESIRTP 217
           ++ W+  G T    +    S+  +++RTP
Sbjct: 513 IKEWIERGTTKSMEAANIMSKLPKTVRTP 541


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 169 RIPWNSNAQAEKKTLPGPLG 110
           +IPW+ N +A  K   G  G
Sbjct: 334 QIPWDKNVEALAKWANGQTG 353


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 78  DGVTQSGLKTPPRGPG 125
           DG     L +PPR PG
Sbjct: 128 DGPPSVSLSSPPREPG 143



 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 71  SFLKTRERLLKRFRCRVPE 15
           S LKT ++L  +  C VPE
Sbjct: 107 SLLKTADQLKIKGLCEVPE 125


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 105 TPPRGPGRV 131
           +PPRGPG V
Sbjct: 397 SPPRGPGGV 405


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 253 SEGCTWRCRAGSYPYPQQVSK 315
           + GCT   R    P+P +V+K
Sbjct: 440 TNGCTAELRKKEPPHPIRVAK 460


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 253 SEGCTWRCRAGSYPYPQQVSK 315
           + GCT   R    P+P +V+K
Sbjct: 426 TNGCTAELRKKEPPHPIRVAK 446


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 253 SEGCTWRCRAGSYPYPQQVSK 315
           + GCT   R    P+P +V+K
Sbjct: 460 TNGCTAELRKKEPPHPIRVAK 480


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 253 SEGCTWRCRAGSYPYPQQVSK 315
           + GCT   R    P+P +V+K
Sbjct: 409 TNGCTAELRKKEPPHPIRVAK 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,677
Number of Sequences: 438
Number of extensions: 2729
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)