Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0972
(382 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 1.4
At5g42370.1 68418.m05159 expressed protein 29 1.4
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 1.4
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 1.8
At5g22390.1 68418.m02612 expressed protein 27 3.2
At5g61910.3 68418.m07772 expressed protein 27 4.2
At5g61910.2 68418.m07771 expressed protein 27 4.2
At5g61910.1 68418.m07770 expressed protein 27 4.2
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 27 4.2
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t... 27 4.2
At2g05210.1 68415.m00549 expressed protein 27 4.2
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 4.2
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 4.2
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 27 4.2
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 27 4.2
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 27 5.6
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 27 5.6
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 26 7.4
At1g60230.1 68414.m06783 radical SAM domain-containing protein ... 26 7.4
At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25... 26 7.4
At5g25580.1 68418.m03044 expressed protein 26 9.7
At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family pr... 26 9.7
At3g18670.1 68416.m02371 ankyrin repeat family protein contains ... 26 9.7
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 26 9.7
At1g67560.1 68414.m07697 lipoxygenase family protein similar to ... 26 9.7
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 239 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 105
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 178 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 68
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 41 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 172
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 234 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 136
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 113 ERSGKSFLFCLSVRVPWNPIEG 178
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At5g61910.3 68418.m07772 expressed protein
Length = 742
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 270 PRTSLTEFSR-SAESIRTPPQMRCSSRSEPYLPS 172
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 253 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 286
>At5g61910.2 68418.m07771 expressed protein
Length = 738
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 270 PRTSLTEFSR-SAESIRTPPQMRCSSRSEPYLPS 172
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 249 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 282
>At5g61910.1 68418.m07770 expressed protein
Length = 738
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 270 PRTSLTEFSR-SAESIRTPPQMRCSSRSEPYLPS 172
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 249 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 282
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 215 GGVRILSADLENSVRDVRGDVAPVRTH 295
GG+++ S + ++S +R DV+P RTH
Sbjct: 12 GGLKVESGEQKSSWPTMRFDVSPYRTH 38
>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
Length = 257
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -1
Query: 205 VLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*RRGNDY*NGSAA 26
+L + + Y P +S AQ +K G G F WV + +R D NG
Sbjct: 69 ILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQI 128
Query: 25 GFRNRNRI 2
G + ++ +
Sbjct: 129 GGKKKSSV 136
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 27.1 bits (57), Expect = 4.2
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 234 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 79
+S T C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 161 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 42
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 161 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 42
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -2
Query: 375 TDPICRLPLHILLYRLDALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 226
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -2
Query: 375 TDPICRLPLHILLYRLDALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 226
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 26.6 bits (56), Expect = 5.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 240 SAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHF 91
S S PP R SS + S F T+++ Q++ FP + AA HF
Sbjct: 10 SMGSSLAPPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHF 57
>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 676
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 195 RSEPYLPSIGFHGTRTLRQKRK 130
R+ PY+P + F G RTL+ +R+
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 26.2 bits (55), Expect = 7.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 32 GTVSIIVPSSLKTSVRRGNPKWPEDA 109
G ++VP +++ +R G KW E+A
Sbjct: 81 GEKEVVVPKAIQLHLRHGWKKWQEEA 106
>At1g60230.1 68414.m06783 radical SAM domain-containing protein
contains Pfam profile PF04055: radical SAM domain
protein
Length = 458
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 126 FPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLP 25
F D+ +AS G R+ L D+G +IETV +P
Sbjct: 161 FKDIRSASDG----TRKILFTLDDGLVIETVVIP 190
>At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25011
G2/mitotic-specific cyclin S13-6 (B-like cyclin)
{Glycine max}; contains Pfam profiles PF00134: Cyclin,
N-terminal domain, PF02984: Cyclin, C-terminal domain
Length = 396
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 291 VRTGATSPRTSLTEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 136
VR S +T++ ++ S++ PP R SRS +PS T +L +K
Sbjct: 13 VRFVRKSIKTTVKTSLQNRSSLKKPPVGRSKSRSISSIPSSAVASTLSLPEK 64
>At5g25580.1 68418.m03044 expressed protein
Length = 405
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 170 IEGRYGSEREEHRICGGVRILSADLEN 250
+ G ++EE R+C + ILS+D +N
Sbjct: 11 VTGEPEQKKEEERLCEDLTILSSDSDN 37
>At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family
protein similar to enoyl-CoA-hydratase, Avicennia
marina, EMBL:AF190450 [GI:6014701], CoA-thioester
hydrolase CHY1 from Arabidopsis thaliana [GI:8572760];
contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 401
Score = 25.8 bits (54), Expect = 9.7
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 167 DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRE-RLLKRFRCRVPE 15
DS+E+E S RK+ T+ RRL+ + ++ + RE RL +C + E
Sbjct: 280 DSLEIEASRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIRE 331
>At3g18670.1 68416.m02371 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 598
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 267 VEMSRRFVPISAAGLQGEEHLVDRVIYVRXVGKLDP 374
V ++ +PI A L G +HLV + + LDP
Sbjct: 150 VRNAKEHIPIVVASLYGHKHLVQYLYSHTPLSDLDP 185
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 324 ALHLGDLLRIWVRTGATSPRTSLTEFSRSAESIRTPPQMRCSS 196
ALHL +WVRTG S +S + + E I+ P + S
Sbjct: 353 ALHLRMEKDVWVRTGCLSGLSSKYDEIVNIERIKRPELLTAKS 395
>At1g67560.1 68414.m07697 lipoxygenase family protein similar to
13-lipoxygenase GB:CAA65269 [Solanum tuberosum],
gi:1654140 [Lycopersicon esculentum]
Length = 917
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 216 PQMRCSSRSEPYLPSIGFHGTRTLRQK 136
PQ R RS+P LPS G + LR+K
Sbjct: 209 PQARIIFRSQPCLPSETPDGIKELREK 235
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,003,880
Number of Sequences: 28952
Number of extensions: 187330
Number of successful extensions: 596
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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