Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0965
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.59 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.59 
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    27   1.8  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.4  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.2  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    26   4.2  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   4.2  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.5  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   7.3  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   7.3  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   9.7  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   9.7  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.7  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 394 SGCGRCRVWSMFVRYVRFSE 453
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 576 ARKIRGRPENAGPDPVRNVRRFRSVILNIY 487
           AR I GRPEN G   ++N+ R   V L ++
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKVFLPVH 243


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 138 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTHD 31
           ++   GTR L+ K    PD+  ++ G + L   T+D
Sbjct: 8   NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSASTND 43


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 427 TSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQLPTS 317
           TS    +     P+ PD  R  +P + P LR+QL T+
Sbjct: 248 TSISASSNAFYKPAAPDNERPLDPHITPYLRLQLLTT 284


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 257 GTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 138
           GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 374 GTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 457 LTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQ--LPTSLTYIILSTRGS 284
           +TR N+ + R   +  T   R  +K      S+PIL  +LR     PTS+ Y+   T   
Sbjct: 56  ITRLNQDDVRLFEKAKTVADR--TKDVAYSFSDPILSTQLRTPPPQPTSIRYLYFGTYRI 113

Query: 283 SPW 275
            PW
Sbjct: 114 KPW 116


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 179  RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATLGYPVEHTILK 24
            +K   + +P HI LL +  E + + +++ +   SRRR    L    EH +LK
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL---YEHIVLK 1085


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 174 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 37
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 431 TNIDQTRHRPHPLPVQTRHAPV 366
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 654 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRF 511
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSF 382


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 33  RVFDGVTQSGLKTPPRGPGRV 95
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 33  RVFDGVTQSGLKTPPRGPGRV 95
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 312 PTLFYRLEALHLGDLLRIWDEPARHLHVHPSPEFSRSAESIRTPPQ 175
           P L+ +LEA    D+  ++++ +  L +   P+FS       T P+
Sbjct: 97  PVLYQQLEASSTNDISTVFEDESSSLPIILHPKFSSMQVRTVTSPK 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,568
Number of Sequences: 5004
Number of extensions: 60011
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)