Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0965
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0630 - 20097672-20097772,20097983-20102012                       33   0.15 
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.81 
06_01_0350 + 2534422-2535615                                           31   1.1  
01_01_0012 + 71903-72935,73468-73981,74619-76008                       30   1.9  
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111     29   2.5  
03_01_0563 + 4169144-4169516,4170362-4170648,4171339-4171576,417...    29   2.5  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   4.3  
07_03_0078 - 13147741-13148913                                         28   5.7  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   7.6  
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    28   7.6  
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821...    28   7.6  

>07_03_0630 - 20097672-20097772,20097983-20102012
          Length = 1376

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -2

Query: 324 RLPLPTLFYRLEALHLGDLLRIWDEPARHLHVHPSPEFSRSAESIRTPPQMRCS-SRSEP 148
           +L +P   +  E LH  D+ + W + A  +  HP  E S   E IR P     +  R+  
Sbjct: 202 KLHVPHKGWITETLHKIDMSK-WTQQAIEVSPHPENEKSNKVEYIRHPHDSAVTYLRNPA 260

Query: 147 YLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 52
            +P +G  G       + +F D +     HFG
Sbjct: 261 VIPIVGISGVGKSALAKFIFDDANVRE--HFG 290


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -3

Query: 431 TNIDQTRH------RPHPLPVQTRHAPVLRANP 351
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 127 PWNSNAQAEKKTLPGPLGGVFRP 59
           PW S+A+ E+K LP PL  +F P
Sbjct: 42  PWRSSARLERKLLPPPLPWLFLP 64


>01_01_0012 + 71903-72935,73468-73981,74619-76008
          Length = 978

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 25/79 (31%), Positives = 34/79 (43%)
 Frame = -2

Query: 255 DEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLS 76
           ++ AR     PSP   RS    R+P + R S RS  Y P +     R  R +R   P  S
Sbjct: 508 EKDARGKSRSPSPSARRSKSRSRSPIKYRRSRRSRSYSPPV-----RHTRGRRSRSPSRS 562

Query: 75  AASSGHFGLPRRTHDFKDE 19
             S   +G  R   D +D+
Sbjct: 563 YHSK--YGSDRSYRDDRDK 579


>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
          Length = 553

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = -2

Query: 282 HLGDLLRIWDEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRT-LR 106
           HL +++       RH  V  SP   R+  + RT P  R + R     PSI    +RT  +
Sbjct: 240 HLANVVNQGLTQTRHTSVRVSPSVGRTVSATRTTPATR-AGRGMSNAPSIQIPQSRTRFK 298

Query: 105 QKRKLFPDLSAASSGHFG 52
           +     P +   +   FG
Sbjct: 299 RVGATSPGIVTLNDNQFG 316


>03_01_0563 +
           4169144-4169516,4170362-4170648,4171339-4171576,
           4172473-4172796,4172914-4172999,4173124-4173231,
           4173315-4173619,4173733-4173960,4174109-4174877
          Length = 905

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -2

Query: 198 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTHDF 28
           +S R  P  R    ++PYLPS    G R LR+K     DL    +G   L  R +D+
Sbjct: 205 QSTRELPTKRVFFSNKPYLPSETPPGLRELREKE--LKDLRGDGTGVRKLSDRIYDY 259


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 407 RPHPLPVQTRHAPVLRANPYSEVTDP 330
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 536 SGPAFSGLPRIFLAVSRVGFVSCAI 610
           SGP + G  R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -1

Query: 433 ARTSTRPGTGRIRFPSKPDTPRSSE 359
           A TST PG GR R PS P TP  S+
Sbjct: 16  AATSTDPGRGRKRPPS-PSTPTPSD 39


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 421 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 335
           TRP TG+   P K D  RS   + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136


>05_03_0079 +
           8212648-8212724,8212844-8212993,8213211-8213351,
           8213658-8213820,8213901-8214094,8214174-8214369,
           8214462-8214539,8214933-8215162,8215574-8215688,
           8215878-8215952,8216032-8216172,8216309-8216512,
           8216586-8216747,8216787-8216794,8217099-8217223,
           8217316-8217438,8218177-8218307,8218527-8218658
          Length = 814

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
 Frame = +1

Query: 316 GKSAIGSVTSE*GLALRTGACRVWTGSGCGRCRVWSMFVRYV----RFSELVF*YNAASK 483
           G + IG +T+  G+  RT   R     G  +C      V+ V    +++E +   NA  +
Sbjct: 128 GTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKNVEQQFKYTEPIICVNATCQ 187

Query: 484 TVYI*YDTPKSSYVSDWIRTRVLRPSADLPSRKSCRFRFVRDRHDSIRPPFNGQ--LRTG 657
                    + S  +DW R R+   S ++P+    R   V  RH+ +     G   + TG
Sbjct: 188 NRSKWALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKARAGDTVIFTG 247

Query: 658 T 660
           T
Sbjct: 248 T 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,695,492
Number of Sequences: 37544
Number of extensions: 451601
Number of successful extensions: 1669
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)