Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0965
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 30 1.2
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 3.6
At5g42370.1 68418.m05159 expressed protein 29 3.6
At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase fa... 29 3.6
At1g17420.1 68414.m02128 lipoxygenase, putative similar to lipox... 29 3.6
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 28 6.3
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 6.3
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 27 8.4
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 27 8.4
At5g22390.1 68418.m02612 expressed protein 27 8.4
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id... 27 8.4
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa... 27 8.4
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 8.4
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 198 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTHDF 28
+S + P R ++PYLPS G RTLR+K +L G L R +D+
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREKE--LENLRGNGKGERKLSDRIYDY 269
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 203 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 69
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 142 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 32
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase
family protein similar to phosphatidylinositol 4-kinase
type-II beta [Homo sapiens] GI:20159767; contains Pfam
profile PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 630
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -3
Query: 125 MELERSGRKENSSRTSRRRLQATLGYPVEHTILKTRERILK 3
+EL+RS +++ T +R+LQ L +P+E + L + +LK
Sbjct: 55 LELDRS----DNAHTVKRKLQVALNFPIEESSLTFGDLVLK 91
>At1g17420.1 68414.m02128 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum]
Length = 919
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 198 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTHDF 28
+S + P R ++PYLP+ G R LR+K +L SG L R +DF
Sbjct: 209 QSQKDHPDKRIFFTNQPYLPNETPSGLRVLREKE--LKNLRGDGSGVRKLSDRIYDF 263
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 508 PKSSYVSDWIRTRVLRPSADLPSRKSCRFRFVRDRHDSI--RPP 633
PK + V +W++ +L+ ADL S RF D + +PP
Sbjct: 398 PKKAPVPNWLKEELLKKKADLGRPSSGRFEERESMDDDVLYKPP 441
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 508 PKSSYVSDWIRTRVLRPSADLPSRKSCRFRFVRDRHDSI--RPP 633
PK + V +W++ +L+ ADL S RF D + +PP
Sbjct: 385 PKKAPVPNWLKEELLKKKADLGRPSSGRFEERESMDDDVLYKPP 428
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 455 NSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPIA 324
N K T TN T R +P P Q + P + NP ++ T+P A
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNPPA 192
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 455 NSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPIA 324
N K T TN T R +P P Q + P + NP ++ T+P A
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNPPA 192
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 77 ERSGKSFLFCLSVRVPWNPIEG 142
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
identical to GB:AF034694
Length = 154
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 535 SSPKRKTISECH-IKYIQFLRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRS 365
+ PK K + +K Q + KI T+ H +T T+P TG ++P TPR+
Sbjct: 12 ADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTG--KYPKISATPRN 67
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 683
Score = 27.5 bits (58), Expect = 8.4
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = -1
Query: 409 TGRIRFPSKPDTPRSSEPILIPKLRIQLPTSLTYIILSTRGSSPWRP--AADMGRTGATS 236
T R F S P TPRS LR + T+ +ST S P P TG T+
Sbjct: 35 TSRFGFFSTPSTPRSDSGTGTYSLRCRTSTATA---VSTTSSLPGTPKLKCKTTTTGETT 91
Query: 235 PR 230
PR
Sbjct: 92 PR 93
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 240 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 151
H H +P+ S S S+RTPP R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,200,268
Number of Sequences: 28952
Number of extensions: 336180
Number of successful extensions: 1060
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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