Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0963
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    24   1.3  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    22   4.0  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   7.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.3  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +1

Query: 376 KHHQMQIVADNPNWSVSLNPQPVAISLASFLRFHAVTKISVII 504
           KH Q     D  +W + L  +  A+ L   LR + +  +   I
Sbjct: 334 KHEQQGAAPDYRHWQIPLGRRFRALKLWFVLRLYGIENLQAFI 376


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 464 KLAKDIATGCGFKDTDQFGLSATIC 390
           K+ ++I  G   K  D+F    TIC
Sbjct: 79  KMGREIEVGYDLKSPDRFVRQFTIC 103


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 544 ISFNTFIFLFHCSLL 500
           IS  + IFLF+C+L+
Sbjct: 240 ISLVSLIFLFNCTLI 254


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 187 GLYILRQCCSFFIKSFGDQLSKFCRK 110
           G+Y    C  FF ++    LS  CR+
Sbjct: 99  GVYSCEGCKGFFKRTVRKDLSYACRE 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,488
Number of Sequences: 336
Number of extensions: 3409
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)