Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0963
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.18 |||mitochondrial distribution and morphology protein ... 52 6e-08
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 29 0.47
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 0.47
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 28 1.4
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.3
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.8
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.8
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 26 5.8
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c... 25 7.7
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 7.7
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual 25 7.7
>SPBC119.18 |||mitochondrial distribution and morphology protein
Mdm35 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 69
Score = 52.4 bits (120), Expect = 6e-08
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +1
Query: 160 NSIGEECTDLKKKYDDCFNTWFSERFLKGD 249
+S+ EECT KKKYD CFN W++ +FLKGD
Sbjct: 3 SSVSEECTPAKKKYDACFNDWYANKFLKGD 32
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 29.5 bits (63), Expect = 0.47
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 160 NSIGEECTDLKKKYDDCFNTWFSERFLKGDQEILFALEYLKFIKNVLRMQ*NSKALIS 333
NSI E D + W+ +RF + +L A +Y K + ++L NSK +S
Sbjct: 124 NSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCKTVSSLLNDLDNSKTKLS 181
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.47
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 9 INCTHYLILVSTTKSERNIDCK 74
+NCTHYL++ +K + IDCK
Sbjct: 375 VNCTHYLLVDLFSKYGKVIDCK 396
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 403 DNPNWSVSLNPQPVAISLASFLRFHAVTKISVIIGYS 513
D N VS +P ++I++ + +RF+ V +I +GYS
Sbjct: 77 DKMNKVVSFDPDSLSITVQAGIRFYQVQEILQNLGYS 113
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 246 RSRDSVCAGIFKIYQECVKN 305
+S+D+V G+ +IYQ+CV+N
Sbjct: 149 KSKDTVELGLEEIYQQCVQN 168
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -3
Query: 580 LCTNFIIHTRNFISFNTF----IFLFHCSLLSLKSW*LHGILRNLPRILQQAVGL 428
LC F ++T + F T L C++ SW H +L+ +LQ+ + L
Sbjct: 2985 LCVVFYVYTSADVDFQTNSLSPALLNRCTIDYYHSWDYHSMLQIANEVLQETISL 3039
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 5.8
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 18/88 (20%)
Frame = -2
Query: 350 ILIYFFEINALLFHCILNTFLINFKYSSANRIS*SP-FKNLSENQVLKQSS--------- 201
I IY N ++F+CILN Y + RI+ P KN + +++S
Sbjct: 17 IFIYLSVANKIMFYCILNERAFK-HYKTYRRITDCPEIKNKKSRRKNQRNSSSIGLSNPN 75
Query: 200 --------YFFFRSVHSSPMLFIFY*IF 141
YFFF S SP LF + +F
Sbjct: 76 KFSIYIYIYFFFYSFLCSPYLFKYISLF 103
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 397 VADNPNWSVSLNPQPVAISLASFLRFHAVTKISVIIGY 510
+A+NP S+SL P I SFL F+ +I GY
Sbjct: 66 IAENPYQSLSLESVPSKILFGSFL-FYVKDRIPEKAGY 102
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 391 QIVADNPNWSVSLNPQPVAISLASFL 468
Q+V P WS SL+P + +AS L
Sbjct: 103 QVVLSAPVWSASLHPHKINTFVASLL 128
>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 592 YTFILCTNFIIHTRNFISFNTFIFLFHCSLLSLK 491
YTFI N +I + I + HCS++S K
Sbjct: 98 YTFIGSINSVIDKKEDIEQELYSSCMHCSIMSPK 131
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 654 ILNYFISGIKKIRLKSFNPSIIHLFYALISSFTQETS*VLTHS 526
++ +F+ K I L H+FY+L++SFT L H+
Sbjct: 452 VIPFFLPSDKLIMLVESEYRNKHIFYSLLNSFTMVMFPELRHT 494
>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 107 LKLKRYPQLISFTIDVSFRFGS 42
L +KRYP I FT+ S +G+
Sbjct: 2 LTIKRYPGAIEFTVHTSKSYGT 23
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,147
Number of Sequences: 5004
Number of extensions: 57866
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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