Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0963
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0035 - 11765108-11765376,11765909-11766005,11766505-117665...    37   0.013
12_02_0867 - 23828084-23828845,23828931-23829067,23829148-238293...    29   4.5  
08_02_0577 + 18890801-18891600,18892033-18892911,18903566-189037...    28   7.9  

>09_03_0035 -
           11765108-11765376,11765909-11766005,11766505-11766579,
           11767367-11767650,11768466-11768562
          Length = 273

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 178 CTDLKKKYDDCFNTWFSERFLKG 246
           C++L+  Y +CFN W++E+F KG
Sbjct: 86  CSELRAAYHECFNRWYAEKFAKG 108


>12_02_0867 -
           23828084-23828845,23828931-23829067,23829148-23829354,
           23830226-23831027
          Length = 635

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 267 AGIFKIYQECVKNAMKQQSIDFKEIDKDILG 359
           A + ++      N +K+Q+ DF E+++D++G
Sbjct: 359 AELARLELNITSNCLKEQTFDFSEVEQDLIG 389


>08_02_0577 +
           18890801-18891600,18892033-18892911,18903566-18903707,
           18903726-18904355
          Length = 816

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 511 CSLLSLKSW*LHGILRNLPRILQQAVGL 428
           C L SLK   LHG LR+LPR ++   GL
Sbjct: 661 CELTSLK---LHGELRSLPRFVKWHTGL 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,830,831
Number of Sequences: 37544
Number of extensions: 297761
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)