Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0963
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    24   1.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.7  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 22/78 (28%), Positives = 38/78 (48%)
 Frame = +3

Query: 138 PKDLIKNEQHWRRMYRPKEKIR*LFQYLVLGKVLKRRSRDSVCAGIFKIYQECVKNAMKQ 317
           PK L+K E  +  +   K KI  + Q+++    ++   R S    IFK   +  + A   
Sbjct: 33  PKPLLKKE--YPLVMDTKLKIIEILQFIL---DVRLDYRISCLLSIFKQEFDETERASGD 87

Query: 318 QSIDFKEIDKDILGTENE 371
            S+  K ID +++GT+ E
Sbjct: 88  LSLGQKTIDLELIGTQAE 105


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 22/78 (28%), Positives = 38/78 (48%)
 Frame = +3

Query: 138 PKDLIKNEQHWRRMYRPKEKIR*LFQYLVLGKVLKRRSRDSVCAGIFKIYQECVKNAMKQ 317
           PK L+K E  +  +   K KI  + Q+++    ++   R S    IFK   +  + A   
Sbjct: 1   PKPLLKKE--YPLVMDTKLKIIEILQFIL---DVRLDYRISCLLSIFKQEFDETERASGD 55

Query: 318 QSIDFKEIDKDILGTENE 371
            S+  K ID +++GT+ E
Sbjct: 56  LSLGQKTIDLELIGTQAE 73


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +1

Query: 379 HHQMQIVADNPNWSVSLNPQPVAISLASFLRFHAVTKISV 498
           HHQ    + NP    +    P   SL S L   AV   +V
Sbjct: 14  HHQQLFSSANPGTIQACTTSPATASLESSLSAAAVAAAAV 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,450
Number of Sequences: 438
Number of extensions: 3658
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)