Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0961
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    25   3.1  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.4  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   5.4  
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom...    24   7.1  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.4  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    24   9.4  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    24   9.4  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    24   9.4  

>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -1

Query: 264 CIGKRFSAIHFQGWLLRQVSRCTLLSGFRLPWPPSCCHERPTPFMVS 124
           C G    A  F    LRQ+     +   R P   SC H    PF V+
Sbjct: 49  CKGSGMVADVFSQHQLRQLVGSMGIGHLRYPTAGSCAHSEAQPFYVN 95


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 111 LGALTLRLVHPTAPVLLTKIG 49
           +G   LR V+P +P+LLT  G
Sbjct: 323 IGHKELRFVYPISPILLTLAG 343


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 126 SHERFLGALTLRLVHPTAPVLLT 58
           +HE +  AL + L +P  P++LT
Sbjct: 4   NHEVYKDALPISLAYPLPPIILT 26


>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 112 FRRLNTTFGSSHSASSAYQNWPTWHRHQISGF 17
           FRRL++TF +S+ AS  ++      + +I G+
Sbjct: 11  FRRLSSTFKASNKASIEWKKQNIAVKRKIGGY 42


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 382 EAPSCSRPDPFALSVAHVLLVT 317
           E P   RPD    S+ H+ LVT
Sbjct: 185 EMPVLQRPDWLRSSIRHIFLVT 206


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 157 AGRWPWKSESAKECATTHLPKQ 222
           +G W WKS S K+  T    KQ
Sbjct: 138 SGFWAWKSVSTKKYLTLSREKQ 159


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 144 PTPFMVSHERFLGALTLRLVHPTAPVLLTKIGP 46
           P P + SH R        L+HP  P L   + P
Sbjct: 556 PDPLVASHARSSMQTIESLIHPRFPPLQKHLSP 588


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 93  RLVHPTAPVLLTKIGPLGTVIRSPASSF 10
           R+V+P   V  T  G L  VI   ASSF
Sbjct: 227 RVVNPECSVTDTPYGKLNNVIGEGASSF 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,633
Number of Sequences: 5004
Number of extensions: 31526
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)