Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0961
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0094 - 730484-731570,732030-732715 28 2.2
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 2.9
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 2.9
12_01_0258 - 1900564-1901101,1901838-1902004 27 3.8
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 27 3.8
01_01_0097 - 741881-742977,743100-743320,743438-744156 27 3.8
07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609 27 5.1
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 27 6.7
12_02_0799 + 23282793-23282896,23283090-23283172,23283303-232834... 26 8.9
06_03_0438 - 20777267-20777270,20777966-20778381 26 8.9
03_05_0778 - 27638380-27639906 26 8.9
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 192 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 97
+ G +LP P C + P P +V RF LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -1
Query: 228 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 145
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 65 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 229
+TG G KR +KA +K S+D + R QQ G + + + ++Q+ +S P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319
>12_01_0258 - 1900564-1901101,1901838-1902004
Length = 234
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 151 MTAGRWPWKSESAKECATTHLPKQPALKMDGA-EAFAYTLPLP 276
M + RW WK+E+A E + M G EA A +P P
Sbjct: 21 MASARWRWKAEAAHERRAAERDAMDGMGMGGTREAGADHVPEP 63
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 159 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKI 52
C E PF HE ALTL + PTA L+ K+
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358
>01_01_0097 - 741881-742977,743100-743320,743438-744156
Length = 678
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 192 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 97
+ G +LP P C + P P +V RF LT
Sbjct: 640 VGGLQLPSRPFFCDDEPLPLLVDSCRFSSELT 671
>07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609
Length = 475
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 118 LMGHHERRWSLMTAGRWPWKSESAKEC 198
L G HER GRW W+ AKEC
Sbjct: 302 LPGQHERE------GRWWWEDAKAKEC 322
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 124 GHHERRWSLMTAGRWPWKSESAKEC-ATTHLPKQPALKMDGAEAFAYTLPLP 276
GH ++ W G P K+ES E + + QP LK+D A+ A +P
Sbjct: 683 GHDDQDWLFDHDGTQPKKTESETEADGASQVWAQP-LKIDQADVIALPYVIP 733
>12_02_0799 +
23282793-23282896,23283090-23283172,23283303-23283495,
23283618-23283756,23283844-23283894,23284274-23284439,
23284591-23284757,23284857-23285030,23285120-23285215,
23285288-23285425,23285525-23285844,23285924-23286188,
23286332-23286575,23288025-23288106,23288189-23288366
Length = 799
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 137 LSWCPMSVF*AP*HYVWFIPQRQFCLPKLAHLAPSSDL 24
++W P++ P + +P RQ+ LPKL A +DL
Sbjct: 579 ITWIPIAGVLFPLMIMLLVPVRQYILPKLFKGAHLTDL 616
>06_03_0438 - 20777267-20777270,20777966-20778381
Length = 139
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 164 GGHGSRNPLRSVQRLTCRSNQP*-KWMALKRLPIHYRYR 277
GG GSR RS + T ++ +W A++RLP + R R
Sbjct: 37 GGGGSRGRRRSGRGGTADDDEEALRWAAIERLPTYSRMR 75
>03_05_0778 - 27638380-27639906
Length = 508
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 142 NAFHGVP*AFFRRLNTTFGSSHSASSAYQNWPTW 41
NAF G+P +FFR + S S + + W W
Sbjct: 132 NAFSGLPHSFFRGMPELHYFSISDNPRLEEWGLW 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,031,891
Number of Sequences: 37544
Number of extensions: 253891
Number of successful extensions: 593
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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